# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ii1A 301 1.296 1hr6A 475 2.030 d.185.1.1,d.185.1.1 61164,61165 1f0kA 364 2.166 c.87.1.2 35465 2f4lA 297 2.368 b.23.3.1 132927 2f4eA 180 3.771 1bg6A 359 4.207 a.100.1.5,c.2.1.6 18810,30214 2q4aA 330 5.035 b.82.2.8 139839 2fp4B 395 5.115 c.23.4.1,d.142.1.4 133897,133898 2ag6A 314 5.497 2nu8B 388 6.667 2e8yA 718 7.751 1erjA 393 8.740 b.69.4.1 27660 1zbtA 371 9.218 2q4gW 461 11.85 c.10.1.1 139849 1tltA 319 12.35 c.2.1.3,d.81.1.5 107135,107136 2gtqA 867 12.71 1ri6A 343 13.91 b.69.11.1 97503 1xg7A 250 14.18 a.96.1.6 115281 2g0wA 296 14.86 c.1.15.4 134503 1yzyA 413 15.46 c.146.1.1 124292 1zc6A 305 16.09 c.55.1.5,c.55.1.5 124888,124889 2fldA 165 16.09 1vm7A 311 18.15 c.72.1.1 108884 2og2A 359 19.48 1zj8A 566 19.62 2a6hA 315 19.81 d.74.3.1,d.181.1.1 126260,126261 1vpbA 451 21.95 d.283.1.1 113950 2d1cA 496 21.96 2ejwA 332 22.18 2fvyA 309 23.77 c.93.1.1 134227 2q4eA 362 25.08 1aijH 260 26.75 b.41.1.1,f.23.10.1 25466,43463 3c8yA 574 27.97 1xovA 326 28.43 b.34.11.4,c.56.5.6 122206,122207 2a67A 167 30.78 1jdc 429 31.19 1j9lA 247 31.21 c.106.1.1 62762 2ia2A 265 33.09 1fs5A 266 33.53 c.124.1.1 65044 2biqA 219 35.66 2dpxA 174 37.03 2hahA 116 37.10 2sakA 121 37.29 d.15.5.1 37711 1a0dA 440 37.47 c.1.15.3 29533 1i19A 561 37.98 d.58.32.3,d.145.1.1 61522,61523 1tuoA 464 38.13 2sak 121 38.28 2f9lA 199 38.31 c.37.1.8 133166 1fvuA 133 39.17 d.169.1.1 42345 1hk8A 605 43.20 c.7.1.3 83540 1rzhH 260 44.15 b.41.1.1,f.23.10.1 98162,98163 2dg1A 333 44.30 b.68.6.1 131493 2z2nA 299 46.29 2j3mA 572 46.72 2cvzA 289 47.33 a.100.1.1,c.2.1.6 130890,130891 2cmzA 423 47.33 1bu6O 501 47.94 c.55.1.4,c.55.1.4 33499,33500 1a0rB 340 47.95 b.69.4.1 27658 1w2tA 432 48.12 b.29.1.19,b.67.2.3 120607,120608 1v4vA 376 48.22 c.87.1.3 100313 1ys4A 354 48.34 2qmqA 286 49.42 2f48A 555 50.10 c.89.1.1 132915 2g9wA 138 50.19 1pvlA 301 50.48 f.6.1.1 43819 1evyA 366 51.22 a.100.1.6,c.2.1.6 18811,30215 1j34A 129 53.03 d.169.1.1 84048 2bcjB 340 53.52 b.69.4.1 128289 1z15A 344 54.48 1vi6A 208 55.29 c.23.15.1 100736 1t1vA 93 55.48 c.47.1.14 106278 1v7pB 128 55.65 d.169.1.1 108407 2o2zA 323 55.80 2v8iA 543 58.09 2sli 679 61.40 1c7sA 858 61.66 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 2f9sA 151 61.82 c.47.1.10 133168 1z9tA 255 62.01 2sasA 185 62.66 a.39.1.5 17258 2pggA 774 62.99 2ocgA 254 64.41 1rzuA 485 66.92 c.87.1.8 105140 2e3jA 356 69.11 2i9iA 254 70.44 1a0cA 438 71.87 c.1.15.3 29529 1r17A 343 72.22 b.2.3.4,b.2.3.4 96796,96797 1hslA 238 73.09 c.94.1.1 35804 1k32A 1045 73.40 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2bpa1 426 74.37 1iwmA 186 77.02 b.125.1.2 83758 1j34B 123 77.24 d.169.1.1 84049 1lu4A 136 79.07 c.47.1.10 91124 2fx5A 258 79.77 1p22A 435 80.35 a.158.1.1,b.69.4.1 87715,87716 3cnhA 200 80.90 2aq6A 147 82.34 b.45.1.1 127156 1irxA 523 83.28 a.97.1.2,c.26.1.1 71378,71379 2uvfA 608 85.81 2eyuA 261 87.83 1qgrA 876 88.27 a.118.1.1 19119 1oz2A 331 88.56 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1usgA 346 89.64 c.93.1.1 99864