# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	2.742		
1yzyA	413	9.872	c.146.1.1	124292
1fvuA	133	12.90	d.169.1.1	42345
2f4lA	297	14.70	b.23.3.1	132927
1v04A	355	16.49	b.68.6.2	100240
1j34A	129	19.54	d.169.1.1	84048
1xg7A	250	19.61	a.96.1.6	115281
1v7pB	128	20.74	d.169.1.1	108407
1vpbA	451	29.35	d.283.1.1	113950
1bg6A	359	35.10	a.100.1.5,c.2.1.6	18810,30214
2fldA	165	36.20		
2f4eA	180	36.32		
1lu4A	136	36.48	c.47.1.10	91124
1alvA	173	40.78	a.39.1.8	17370
1vl4A	447	42.71	d.283.1.1	108718
1hc7A	477	45.88	c.51.1.1,d.104.1.1,d.68.5.1	60938,60939,60940
2g9wA	138	51.19		
1gz2A	142	55.97	d.169.1.1	83392
1j34B	123	57.35	d.169.1.1	84049
1azsC	388	57.60	a.66.1.1,c.37.1.8	18203,32086
2pkhA	148	58.96		
1k0eA	453	59.08	d.161.1.1	67938
1wt9B	123	61.09	d.169.1.1	121255
2phjA	251	61.37		
1v7pA	134	63.27	d.169.1.1	108406
1dytA	133	64.54	d.5.1.1	37288
2os5A	119	64.84		
1jwiB	125	69.96	d.169.1.1	67384
1cxyA	90	72.84	d.120.1.1	41085
1fp3A	402	74.64	a.102.1.3	18842
1jznA	135	80.19	d.169.1.1	84262
1xwmA	217	80.61	a.7.12.1	116132
1kb9A	431	80.99	d.185.1.1,d.185.1.1	77311,77312
2sasA	185	83.95	a.39.1.5	17258
1f9aA	168	84.35	c.26.1.3	31602