# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	2.355		
1yzyA	413	9.755	c.146.1.1	124292
1bg6A	359	10.73	a.100.1.5,c.2.1.6	18810,30214
2f4lA	297	11.67	b.23.3.1	132927
1vpbA	451	13.41	d.283.1.1	113950
1vl4A	447	14.38	d.283.1.1	108718
2yquA	455	16.24		
1xg7A	250	22.60	a.96.1.6	115281
1v04A	355	30.87	b.68.6.2	100240
2gf9A	189	31.09		
2sasA	185	32.23	a.39.1.5	17258
1j34A	129	33.42	d.169.1.1	84048
1fvuA	133	33.53	d.169.1.1	42345
1z08A	170	34.12	c.37.1.8	124303
3chvA	284	37.63		
2g9wA	138	38.42		
2e8yA	718	44.70		
1lu4A	136	46.82	c.47.1.10	91124
1azsC	388	47.32	a.66.1.1,c.37.1.8	18203,32086
2fu5C	183	49.39	c.37.1.8	134104
1v7pB	128	50.53	d.169.1.1	108407
2h1qA	270	60.76		
2dpxA	174	62.02		
1k0eA	453	69.10	d.161.1.1	67938
1ywqA	200	72.91	d.90.1.1	124162
1wmsA	177	81.32	c.37.1.8	109414
1v7pA	134	81.78	d.169.1.1	108406
3c5cA	187	83.82