# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	2.637		
2f4lA	297	10.62	b.23.3.1	132927
1xg7A	250	11.08	a.96.1.6	115281
1vl4A	447	12.21	d.283.1.1	108718
1yzyA	413	13.69	c.146.1.1	124292
1bg6A	359	15.88	a.100.1.5,c.2.1.6	18810,30214
1fvuA	133	18.38	d.169.1.1	42345
1j34A	129	18.75	d.169.1.1	84048
1vpbA	451	22.64	d.283.1.1	113950
2fz4A	237	27.76	c.37.1.19	134419
1v7pB	128	28.02	d.169.1.1	108407
2f4eA	180	31.03		
1lu4A	136	32.02	c.47.1.10	91124
2sasA	185	33.98	a.39.1.5	17258
2g9wA	138	36.50		
3chvA	284	41.79		
1v04A	355	51.17	b.68.6.2	100240
1azsC	388	51.78	a.66.1.1,c.37.1.8	18203,32086
1gz2A	142	56.78	d.169.1.1	83392
2biqA	219	57.60		
2bptA	861	58.39	a.118.1.1	128951
1v7pA	134	65.16	d.169.1.1	108406
1alvA	173	66.69	a.39.1.8	17370
1wt9B	123	70.44	d.169.1.1	121255
1j34B	123	73.10	d.169.1.1	84049
1z08A	170	76.04	c.37.1.8	124303
1t1vA	93	78.26	c.47.1.14	106278
2yquA	455	78.65		
1k0eA	453	78.67	d.161.1.1	67938
1jwiB	125	78.71	d.169.1.1	67384
1jznA	135	80.09	d.169.1.1	84262
2fu5C	183	84.43	c.37.1.8	134104
2os5A	119	87.74