# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xg7A	250	12.17	a.96.1.6	115281
2fi1A	190	18.87	c.108.1.3	133508
1uqrA	154	23.78	c.23.13.1	99779
1bg6A	359	23.96	a.100.1.5,c.2.1.6	18810,30214
2hqyA	305	30.24		
1vl4A	447	30.50	d.283.1.1	108718
2yquA	455	34.34		
1ab8A	220	36.56	d.58.29.1	39414
2c4wA	176	37.30		
1ybiA	288	39.99		
1tffA	234	40.01	d.3.1.11	106854
1eysH	259	48.22	b.41.1.1,f.23.10.1	25484,43517
2bhvA	246	51.04		
3bq3A	270	62.89		
2f4eA	180	63.03		
1ywuA	149	66.26	b.45.2.1	124164
1u5hA	273	71.31	c.1.12.5	113037
1h05A	146	72.16	c.23.13.1	76433
3brjA	175	77.17		
2yv8A	164	80.92		
1gtzA	156	82.40	c.23.13.1	70539
1vpbA	451	86.84	d.283.1.1	113950
2ehpA	126	87.31		
2fcaA	213	87.97	c.66.1.53	133262