# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2c4wA	176	6.270		
1xg7A	250	11.37	a.96.1.6	115281
1v04A	355	15.87	b.68.6.2	100240
2ii1A	301	18.06		
1bg6A	359	29.18	a.100.1.5,c.2.1.6	18810,30214
1fvuA	133	37.77	d.169.1.1	42345
2pkhA	148	38.17		
1vl4A	447	42.21	d.283.1.1	108718
1ywuA	149	44.13	b.45.2.1	124164
2yquA	455	44.15		
1ra6A	461	46.83	e.8.1.4	104879
1vpbA	451	48.27	d.283.1.1	113950
1uqrA	154	48.71	c.23.13.1	99779
2bepA	159	48.96	d.20.1.1	128385
1yacA	208	54.22	c.33.1.3	31757
1h05A	146	54.47	c.23.13.1	76433
1dytA	133	58.07	d.5.1.1	37288
1azsC	388	60.25	a.66.1.1,c.37.1.8	18203,32086
2ex5A	207	61.56		
3bq3A	270	61.96		
2sak	121	64.32		
2sakA	121	64.32	d.15.5.1	37711
1hc7A	477	64.48	c.51.1.1,d.104.1.1,d.68.5.1	60938,60939,60940
1wzaA	488	65.77	b.71.1.1,c.1.8.1	121489,121490
2f4lA	297	71.94	b.23.3.1	132927
2aq6A	147	73.53	b.45.1.1	127156
1d8wA	426	74.57	c.1.15.2	29394
1u2eA	289	78.97		
1u5hA	273	85.85	c.1.12.5	113037
2qjwA	176	86.90		
1jykA	254	86.98	c.68.1.13	67458
2b1kA	168	87.31		
2hqyA	305	88.27		
2ocgA	254	89.89