# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhpA 530 2.871 a.160.1.1,d.218.1.3,d.58.16.1 136503,136504,136505 2cy8A 453 5.712 1xpkC 388 6.753 c.95.1.2,c.95.1.2 115747,115748 1zowA 313 8.489 2q66A 525 11.21 1s3iA 310 11.94 b.46.1.1,c.65.1.1 98435,98436 1jkxA 212 12.14 c.65.1.1 66813 1li4A 432 13.20 c.2.1.4,c.23.12.3 84616,84617 1xpmA 396 16.85 c.95.1.2,c.95.1.2 115759,115760 1yslA 402 20.65 1z7mA 344 21.22 d.104.1.1 124632 2hp1A 432 23.20 2ag6A 314 24.14 1wr2A 238 25.11 2g7uA 257 25.35 1qgrA 876 25.78 a.118.1.1 19119 1jr2A 286 26.33 c.113.1.1 67111 1yacA 208 26.33 c.33.1.3 31757 1h8eG 272 28.20 c.49.2.1 60756 1ab8A 220 28.98 d.58.29.1 39414 2bw0A 329 31.72 b.46.1.1,c.65.1.1 129303,129304 2qw5A 335 31.78 2pvfA 334 33.23 1xbyA 216 33.27 c.1.2.3 121846 2e7uA 424 34.49 1pyaB 228 35.43 1s5jA 847 35.86 c.55.3.5,e.8.1.1 112040,112041 1vzwA 244 37.17 c.1.2.1 120553 1zsxA 347 37.59 1tvzA 388 38.30 c.95.1.2,c.95.1.2 107367,107368 2i4iA 417 38.38 2dpoA 319 38.40 1rwyA 109 39.22 a.39.1.4 98002 2ebdA 309 40.61 1hr6A 475 41.53 d.185.1.1,d.185.1.1 61164,61165 3b9pA 297 41.86 1j3mA 129 42.95 d.129.7.1 103836 1w5tA 412 43.04 a.4.5.11,c.37.1.20 114255,114256 1exbA 332 43.13 c.1.7.1 28666 1anf 370 43.47 1v7rA 186 43.60 c.51.4.1 100482 2icjA 233 44.17 1feuA 206 46.91 b.53.1.1 59801 1l6rA 227 47.23 c.108.1.10 77768 2yquA 455 50.60 2qgqA 304 52.55 1e4eA 343 54.31 c.30.1.2,d.142.1.1 59221,59222 1ze3D 125 54.92 b.167.1.1 124976 1evyA 366 56.12 a.100.1.6,c.2.1.6 18811,30215 1qo2A 241 56.74 c.1.2.1 28533 1giqA 413 56.85 d.166.1.1,d.166.1.1 76224,76225 1a99A 344 58.14 c.94.1.1 35812 2fncA 381 59.75 1w8iA 156 60.11 c.120.1.1 114368 2ywrA 216 60.19 1cp2A 269 61.15 c.37.1.10 32269 2carA 196 61.41 c.51.4.1 130161 1y8cA 246 62.28 c.66.1.43 116563 3bbyA 215 62.47 1ehiA 377 63.77 c.30.1.2,d.142.1.1 31716,41484 1h5qA 265 64.74 c.2.1.2 60643 1yy7A 213 64.82 1g55A 343 66.73 c.66.1.26 34247 1wu7A 434 67.34 c.51.1.1,d.104.1.1 121275,121276 3bqaA 148 70.52 1rl4A 188 72.98 d.167.1.1 97636 1m1nA 491 74.63 c.92.2.3 78417 2qkmB 266 76.27 2cfuA 658 76.54 1ywuA 149 78.25 b.45.2.1 124164 1meoA 209 78.37 c.65.1.1 79035 1tyhA 248 80.01 a.132.1.3 107458 2a1fA 247 81.53 c.73.1.3 125991 1brwA 433 81.87 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1qamA 244 83.03 c.66.1.24 34220 1f07A 321 83.32 c.1.16.3 59560 1z7xW 461 83.61 c.10.1.1 124675 2bneA 241 83.64 c.73.1.3 128824 1woqA 267 83.74 c.55.1.10,c.55.1.10 109462,109463 2p8uA 478 83.77 1o17A 345 85.09 a.46.2.1,c.27.1.1 80765,80766 1f0kA 364 85.31 c.87.1.2 35465 2v82A 212 85.58 1oj6A 151 85.99 a.1.1.2 93088 2oqzA 223 86.63 b.100.1.1 139255 2nogA 173 86.78 2au3A 407 87.89