Best Alignments for T0405

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2ii1A	2.2473e+00	2ii1A/T0405-2ii1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vpbA	7.2709e+00	1vpbA/T0405-1vpbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.283.1.1
1ibrB	1.9330e+01	1ibrB/T0405-1ibrB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.118.1.1
2oa5A	3.7779e+01	2oa5A/T0405-2oa5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vl4A	4.1111e+01	1vl4A/T0405-1vl4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.283.1.1
2i5nH	5.0314e+01	2i5nH/T0405-2i5nH-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.41.1.1 f.23.10.1
1amy	5.1121e+01	1amy/T0405-1amy-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gw5A	5.1378e+01	1gw5A/T0405-1gw5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.118.1.10
1bqcA	5.2737e+01	1bqcA/T0405-1bqcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.8.3
1avaA	5.4837e+01	1avaA/T0405-1avaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wzlA	5.7577e+01	1wzlA/T0405-1wzlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.1.18.2 b.71.1.1 c.1.8.1
2qipA	5.9164e+01	2qipA/T0405-2qipA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2aaa	6.0510e+01	2aaa/T0405-2aaa-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yexA	6.1785e+01	1yexA/T0405-1yexA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.47.1.10
1tzjA	6.5197e+01	1tzjA/T0405-1tzjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ae0X	6.5543e+01	2ae0X/T0405-2ae0X-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1a0pA	6.5967e+01	1a0pA/T0405-1a0pA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.9.1 d.163.1.1
2pkhA	6.7128e+01	2pkhA/T0405-2pkhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2bptA	6.8824e+01	2bptA/T0405-2bptA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.118.1.1
1bkdS	6.9339e+01	1bkdS/T0405-1bkdS-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001