# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	0.8395		
1vpbA	451	2.279	d.283.1.1	113950
1ibrB	462	8.057	a.118.1.1	19120
1vl4A	447	13.63	d.283.1.1	108718
2bptA	861	18.01	a.118.1.1	128951
1yexA	186	20.29	c.47.1.10	123021
2hmaA	376	20.46		
3bmaA	407	22.80		
2pkhA	148	23.81		
1a0pA	290	24.34	a.60.9.1,d.163.1.1	18105,42165
1bqcA	302	34.27	c.1.8.3	28831
1uw0A	117	40.34	g.39.1.12	108063
1mp4A	292	44.96	c.68.1.6	79376
1k2fA	190	48.58	b.8.1.2	68054
1tcaA	317	51.45	c.69.1.17	34726
2i5nH	258	53.63	b.41.1.1,f.23.10.1	137064,137065
1xebA	150	55.98	d.108.1.1	115219
1ihp	438	57.03		
1sumB	235	60.93	a.7.12.1	106025
2nogA	173	63.85		
1dytA	133	64.34	d.5.1.1	37288
1ywqA	200	68.96	d.90.1.1	124162
1we0A	187	70.51	c.47.1.10	120930
2os5A	119	71.51		
2axiA	115	76.96	a.42.1.1	127494
2eplX	627	82.01		
2pa4A	323	89.14