# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	0.6813		
1vpbA	451	1.948	d.283.1.1	113950
1vl4A	447	15.26	d.283.1.1	108718
2pkhA	148	21.21		
1ibrB	462	29.27	a.118.1.1	19120
1sumB	235	39.15	a.7.12.1	106025
3bmaA	407	40.39		
1bqcA	302	47.90	c.1.8.3	28831
1k2fA	190	48.64	b.8.1.2	68054
1uw0A	117	52.85	g.39.1.12	108063
2bptA	861	53.82	a.118.1.1	128951
1bdmA	327	53.89	c.2.1.5,d.162.1.1	30137,42104
1yexA	186	61.19	c.47.1.10	123021
3sil	379	61.39		
2odeB	141	61.81		
1xebA	150	63.33	d.108.1.1	115219
1dytA	133	64.82	d.5.1.1	37288
2h1qA	270	65.19		
1azsC	388	66.90	a.66.1.1,c.37.1.8	18203,32086
2hmaA	376	70.52		
2qubA	615	72.84		
1xg7A	250	73.48	a.96.1.6	115281
1tcaA	317	73.79	c.69.1.17	34726
2nogA	173	83.27		
1azsB	212	87.97	d.58.29.1	39423
1k0eA	453	89.15	d.161.1.1	67938