# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	0.3563		
1vpbA	451	2.419	d.283.1.1	113950
1ibrB	462	2.898	a.118.1.1	19120
1bqcA	302	7.605	c.1.8.3	28831
1vl4A	447	9.202	d.283.1.1	108718
2hmaA	376	9.98		
1yexA	186	11.58	c.47.1.10	123021
1ky3A	182	16.29	c.37.1.8	73193
2bptA	861	22.24	a.118.1.1	128951
1wmsA	177	25.92	c.37.1.8	109414
1a0pA	290	28.10	a.60.9.1,d.163.1.1	18105,42165
1qtnA	164	31.61	c.17.1.1	30999
1uw0A	117	35.89	g.39.1.12	108063
1ywqA	200	37.26	d.90.1.1	124162
2fu5C	183	38.57	c.37.1.8	134104
3bmaA	407	40.26		
1vg8A	207	41.29	c.37.1.8	108606
1we0A	187	42.43	c.47.1.10	120930
2p52A	196	44.51		
1lla	628	51.40		
2os5A	119	52.10		
1sfjA	238	56.15	c.1.10.1	112075
1f2rI	100	57.51	d.15.2.1	37641
1q77A	138	58.12	c.26.2.4	96023
2axiA	115	59.05	a.42.1.1	127494
1tcaA	317	60.10	c.69.1.17	34726
3c85A	183	62.51		
2idlA	117	63.89		
1zud1	251	66.16		
2a5jA	191	66.38	c.37.1.8	126175
2rc3A	135	68.47		
2nogA	173	68.99		
1xovA	326	74.46	b.34.11.4,c.56.5.6	122206,122207
1fjgM	126	74.46	a.156.1.1	16293
2odeB	141	74.68		
2qalM	117	75.74		
2liv	344	76.49		
2h1qA	270	77.11		
2i5nH	258	77.40	b.41.1.1,f.23.10.1	137064,137065
1i74A	309	78.21	c.107.1.1	61867
2pfiA	164	81.11		
2qubA	615	81.35		
3rabA	169	81.37	c.37.1.8	32018
1xvwA	160	82.49	c.47.1.10	122387
1ucpA	91	83.18	a.77.1.5	99186
1azsC	388	85.87	a.66.1.1,c.37.1.8	18203,32086
1nmoA	247	86.80	c.135.1.1	91980
2nzhA	113	86.97		
2plnA	137	87.29