# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	0.6200		
1vpbA	451	1.834	d.283.1.1	113950
1ibrB	462	9.183	a.118.1.1	19120
1vl4A	447	16.22	d.283.1.1	108718
3bmaA	407	28.81		
2i5nH	258	30.22	b.41.1.1,f.23.10.1	137064,137065
2pkhA	148	33.34		
1yexA	186	39.07	c.47.1.10	123021
1tcaA	317	39.27	c.69.1.17	34726
1bqcA	302	39.45	c.1.8.3	28831
2bptA	861	44.96	a.118.1.1	128951
2os5A	119	46.61		
1a0pA	290	49.76	a.60.9.1,d.163.1.1	18105,42165
1kvkA	395	52.51	d.14.1.5,d.58.26.3	73060,73061
1ihp	438	53.69		
2r7hA	177	55.49		
1usgA	346	56.23	c.93.1.1	99864
1we0A	187	61.91	c.47.1.10	120930
1xebA	150	69.73	d.108.1.1	115219
1nowA	507	70.84	c.1.8.6,d.92.2.1	85936,85937
2c0dA	221	72.59		
2nogA	173	73.64		
2odeB	141	73.66		
1dytA	133	75.44	d.5.1.1	37288
2eplX	627	80.76		
1wzlA	585	80.76	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1othA	321	85.51	c.78.1.1,c.78.1.1	35260,35261
1bdmA	327	87.00	c.2.1.5,d.162.1.1	30137,42104
1gcuA	295	87.40	c.2.1.3,d.81.1.4	30063,39978
2liv	344	89.61