# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	0.6559		
1vpbA	451	2.102	d.283.1.1	113950
1ibrB	462	12.84	a.118.1.1	19120
1a0pA	290	18.21	a.60.9.1,d.163.1.1	18105,42165
1vl4A	447	21.49	d.283.1.1	108718
3bmaA	407	26.42		
2i5nH	258	32.44	b.41.1.1,f.23.10.1	137064,137065
2bptA	861	33.87	a.118.1.1	128951
2os5A	119	41.60		
1bqcA	302	44.33	c.1.8.3	28831
1kvkA	395	44.72	d.14.1.5,d.58.26.3	73060,73061
2pkhA	148	48.29		
1tcaA	317	48.34	c.69.1.17	34726
1yexA	186	53.52	c.47.1.10	123021
1ihjA	98	54.09	b.36.1.1	62382
2nogA	173	61.13		
1uw0A	117	63.38	g.39.1.12	108063
2odeB	141	66.52		
1ihp	438	67.70		
1gcuA	295	70.99	c.2.1.3,d.81.1.4	30063,39978
1we0A	187	73.71	c.47.1.10	120930
2r7hA	177	81.72		
1nowA	507	84.97	c.1.8.6,d.92.2.1	85936,85937
1xebA	150	85.10	d.108.1.1	115219
1sumB	235	86.57	a.7.12.1	106025
2hmaA	376	87.86		
1wzlA	585	87.97	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515