# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	0.1134		
1vpbA	451	3.491	d.283.1.1	113950
1ibrB	462	4.051	a.118.1.1	19120
1gw5A	621	4.734	a.118.1.10	70629
2i5nH	258	4.828	b.41.1.1,f.23.10.1	137064,137065
1c4zA	358	5.049	d.148.1.1	41766
2vglA	621	11.12		
1uw0A	117	12.56	g.39.1.12	108063
1tkeA	224	15.47	d.15.10.1,d.67.1.1	112470,112471
1bqcA	302	16.48	c.1.8.3	28831
2qk1A	249	19.03		
1a0pA	290	22.54	a.60.9.1,d.163.1.1	18105,42165
2os5A	119	24.01		
1xqoA	256	24.04	a.96.1.6	115853
1zvdA	380	26.80		
1ucpA	91	26.99	a.77.1.5	99186
1ihjA	98	30.84	b.36.1.1	62382
1xg7A	250	31.97	a.96.1.6	115281
2nrqA	159	32.35		
1vl4A	447	33.43	d.283.1.1	108718
2nogA	173	36.93		
1q77A	138	41.57	c.26.2.4	96023
1lghB	45	42.69	f.3.1.1	43734
2bptA	861	44.39	a.118.1.1	128951
1ywqA	200	48.91	d.90.1.1	124162
1t9kA	347	50.33	c.124.1.5	106721
2vglB	591	55.43		
1eysH	259	58.48	b.41.1.1,f.23.10.1	25484,43517
1xebA	150	59.39	d.108.1.1	115219
2c71A	216	62.76	c.6.2.3	130017
2odeB	141	64.69		
2hqyA	305	69.52		
1yb0A	159	70.40	d.118.1.1	122865
2qubA	615	71.85		
1tcaA	317	74.22	c.69.1.17	34726
1ys1X	320	79.04		
1z7lA	276	88.94		
2qalM	117	89.33		
2p3xA	339	89.52