# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	0.2213		
1vpbA	451	2.841	d.283.1.1	113950
1ibrB	462	8.607	a.118.1.1	19120
1yexA	186	10.20	c.47.1.10	123021
1sumB	235	23.64	a.7.12.1	106025
1a0pA	290	24.47	a.60.9.1,d.163.1.1	18105,42165
2i5nH	258	24.50	b.41.1.1,f.23.10.1	137064,137065
1vl4A	447	24.92	d.283.1.1	108718
2liv	344	25.26		
3bmaA	407	29.79		
1bqcA	302	33.95	c.1.8.3	28831
2ekcA	262	36.19		
2nogA	173	38.24		
1tcaA	317	46.13	c.69.1.17	34726
1gcuA	295	47.30	c.2.1.3,d.81.1.4	30063,39978
1ihp	438	49.19		
2os5A	119	52.80		
1uw0A	117	54.48	g.39.1.12	108063
1wmsA	177	55.16	c.37.1.8	109414
1bdmA	327	58.79	c.2.1.5,d.162.1.1	30137,42104
1xebA	150	59.29	d.108.1.1	115219
2pkhA	148	59.61		
1usgA	346	60.70	c.93.1.1	99864
2bptA	861	62.33	a.118.1.1	128951
2odeB	141	68.49		
1azsC	388	71.45	a.66.1.1,c.37.1.8	18203,32086
1jpkA	388	72.18	c.1.22.1	67026
1mp4A	292	72.22	c.68.1.6	79376
2eplX	627	72.33		
1ywqA	200	73.49	d.90.1.1	124162
2i0mA	216	79.42		
3bwwA	307	79.75		
1we0A	187	80.92	c.47.1.10	120930
1k2fA	190	87.51	b.8.1.2	68054
2hahA	116	88.15