# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ii1A 301 0.1481 1vpbA 451 1.143 d.283.1.1 113950 1sat 471 1.287 2q4aA 330 3.541 b.82.2.8 139839 1jdcA 429 4.193 b.71.1.1,c.1.8.1 27789,28776 2v1xA 591 4.721 2hahA 116 4.842 1ah7A 245 5.767 a.124.1.1 19339 2g0wA 296 8.014 c.1.15.4 134503 2pe3A 354 8.078 1wzlA 585 8.379 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2eplX 627 8.988 2cvzA 289 9.754 a.100.1.1,c.2.1.6 130890,130891 1ihp 438 9.886 2i5nH 258 10.43 b.41.1.1,f.23.10.1 137064,137065 2d1cA 496 10.69 3cox 507 10.82 2pq6A 482 11.81 2gtqA 867 12.18 1h7wA 1025 12.35 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1yexA 186 12.97 c.47.1.10 123021 1q7fA 286 13.43 b.68.9.1 96036 1gteA 1025 13.87 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1fcdA 401 15.38 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1id1A 153 17.25 c.2.1.9 62286 1pjxA 314 17.54 b.68.6.1 104167 2ocgA 254 17.79 1f0kA 364 20.99 c.87.1.2 35465 1nd4A 264 21.37 d.144.1.6 91815 1we0A 187 21.67 c.47.1.10 120930 2ie4A 589 21.74 a.118.1.2 137291 1tuoA 464 22.95 2f4eA 180 23.43 2q09A 416 24.39 1z15A 344 25.10 2b5wA 357 25.12 1c4zA 358 25.66 d.148.1.1 41766 1gca 309 26.57 1ml4A 308 28.25 c.78.1.1,c.78.1.1 79255,79256 2a67A 167 28.49 2ia2A 265 30.57 1bg6A 359 31.10 a.100.1.5,c.2.1.6 18810,30214 1j09A 468 31.68 a.97.1.1,c.26.1.1 77025,77026 1fjgB 256 31.75 c.23.15.1 31400 1ffyA 917 35.67 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2vj8A 611 36.70 1ixh 321 38.77 2qxvA 361 39.30 2sakA 121 39.42 d.15.5.1 37711 1amy 403 39.89 2gduA 504 39.90 b.71.1.1,c.1.8.1 135032,135033 2h21A 440 42.74 a.166.1.1,b.85.7.3 135976,135977 2ekcA 262 43.23 2i9iA 254 43.65 1gcuA 295 43.96 c.2.1.3,d.81.1.4 30063,39978 1smlA 269 44.89 d.157.1.1 42053 2v8iA 543 45.08 1xovA 326 45.29 b.34.11.4,c.56.5.6 122206,122207 2gouA 365 46.93 1orrA 347 47.00 c.2.1.2 93460 2akaB 299 48.29 c.37.1.8 126914 2gnqA 336 48.75 1bdmA 327 48.86 c.2.1.5,d.162.1.1 30137,42104 1g5aA 628 48.98 b.71.1.1,c.1.8.1 65152,65153 2bg5A 324 51.22 1ea9C 583 51.41 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1x6vA 630 51.89 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1g5gA 481 52.46 f.12.1.1,h.3.2.1 65155,65156 1j9lA 247 52.70 c.106.1.1 62762 1zrhA 274 53.87 2oolA 337 55.08 1z9tA 255 55.63 1edzA 320 56.36 c.2.1.7,c.58.1.2 30287,33935 1k2fA 190 56.45 b.8.1.2 68054 1xg7A 250 57.33 a.96.1.6 115281 1mp4A 292 59.39 c.68.1.6 79376 1itcA 516 59.48 b.3.1.1,c.1.8.1 83705,83706 1usgA 346 60.06 c.93.1.1 99864 1ztuA 341 60.98 2vduB 450 61.62 1p22A 435 61.65 a.158.1.1,b.69.4.1 87715,87716 1e5eA 404 61.92 c.67.1.3 59265 1gg4A 452 63.24 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1musA 477 63.69 c.55.3.4 79494 2pkhA 148 63.90 3c0bA 334 64.54 1e1aA 314 64.76 b.68.6.1 59155 1a0dA 440 65.54 c.1.15.3 29533 2b8nA 429 65.94 c.118.1.1 128093 2h14A 317 66.04 2ho3A 325 66.62 1ys4A 354 69.93 1clc 639 71.27 1sigA 339 71.53 a.177.1.1 19068 1ibrB 462 72.97 a.118.1.1 19120 2cwsA 237 73.54 1z6kA 293 73.75 2hk0A 309 75.19 1qhlA 227 75.34 c.37.1.12 32382 2r7dA 469 76.49 1n8kA 374 76.92 b.35.1.2,c.2.1.1 80298,80299 2vglA 621 77.73 1ah7 245 78.36 2eo0A 147 78.56 1fehA 574 79.74 c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 2qzuA 491 79.87 2bdqA 224 80.18 1ejeA 192 82.20 b.45.1.2 25757 1k0fA 277 82.60 c.92.2.2 71974 2rjoA 332 83.80 1duvG 333 84.34 c.78.1.1,c.78.1.1 35228,35229 1h4vB 421 85.01 c.51.1.1,d.104.1.1 60624,60625 1ywuA 149 85.63 b.45.2.1 124164 2glxA 332 86.20 2f48A 555 86.42 c.89.1.1 132915 1vi6A 208 87.27 c.23.15.1 100736 2nogA 173 87.90