# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	0.3736		
1vpbA	451	1.613	d.283.1.1	113950
1ibrB	462	9.816	a.118.1.1	19120
1yexA	186	14.83	c.47.1.10	123021
1vl4A	447	19.28	d.283.1.1	108718
2i5nH	258	23.49	b.41.1.1,f.23.10.1	137064,137065
1a0pA	290	24.21	a.60.9.1,d.163.1.1	18105,42165
2pkhA	148	29.32		
3bmaA	407	31.56		
1sumB	235	36.04	a.7.12.1	106025
1j9lA	247	46.65	c.106.1.1	62762
1bqcA	302	47.67	c.1.8.3	28831
1xebA	150	48.04	d.108.1.1	115219
3bwwA	307	49.66		
2phjA	251	51.74		
2os5A	119	52.41		
2ekcA	262	54.49		
2nogA	173	55.79		
2eplX	627	57.76		
2liv	344	57.87		
1bdmA	327	60.09	c.2.1.5,d.162.1.1	30137,42104
1uw0A	117	60.17	g.39.1.12	108063
1gcuA	295	60.97	c.2.1.3,d.81.1.4	30063,39978
1qtnA	164	69.36	c.17.1.1	30999
2bptA	861	73.86	a.118.1.1	128951
1k2fA	190	76.16	b.8.1.2	68054
2odeB	141	76.19		
1tcaA	317	78.26	c.69.1.17	34726
1azsC	388	78.34	a.66.1.1,c.37.1.8	18203,32086
2r7hA	177	82.64		
1ihp	438	83.15		
1we0A	187	83.90	c.47.1.10	120930
1wmsA	177	84.97	c.37.1.8	109414