# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	0.3919		
1vpbA	451	2.343	d.283.1.1	113950
1ibrB	462	15.44	a.118.1.1	19120
2i5nH	258	25.77	b.41.1.1,f.23.10.1	137064,137065
1vl4A	447	28.09	d.283.1.1	108718
2pkhA	148	31.07		
1ah7A	245	35.91	a.124.1.1	19339
1k2fA	190	37.15	b.8.1.2	68054
1bqcA	302	38.38	c.1.8.3	28831
1xebA	150	44.65	d.108.1.1	115219
2bptA	861	45.37	a.118.1.1	128951
1bdmA	327	46.35	c.2.1.5,d.162.1.1	30137,42104
2h1qA	270	46.43		
2liv	344	48.03		
1tcaA	317	49.04	c.69.1.17	34726
1yexA	186	49.27	c.47.1.10	123021
2hmaA	376	52.42		
1xg7A	250	55.27	a.96.1.6	115281
1a0pA	290	58.68	a.60.9.1,d.163.1.1	18105,42165
1usgA	346	60.99	c.93.1.1	99864
1azsC	388	64.06	a.66.1.1,c.37.1.8	18203,32086
1qu7A	227	64.48	h.4.5.1	45789
1k0eA	453	65.03	d.161.1.1	67938
1sumB	235	68.49	a.7.12.1	106025
3bmaA	407	73.55		
2v0uA	146	74.86		
2p5bA	352	77.25		
1sat	471	78.12		
1ywqA	200	80.07	d.90.1.1	124162
2odeB	141	86.06		
1jdcA	429	89.74	b.71.1.1,c.1.8.1	27789,28776