# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	0.2369		
1vpbA	451	1.286	d.283.1.1	113950
1ibrB	462	6.376	a.118.1.1	19120
1vl4A	447	12.87	d.283.1.1	108718
1bqcA	302	17.53	c.1.8.3	28831
1a0pA	290	18.29	a.60.9.1,d.163.1.1	18105,42165
2bptA	861	21.54	a.118.1.1	128951
1wmsA	177	34.24	c.37.1.8	109414
1ywqA	200	34.64	d.90.1.1	124162
1xebA	150	35.37	d.108.1.1	115219
2pkhA	148	36.38		
1qu7A	227	36.79	h.4.5.1	45789
1yexA	186	37.29	c.47.1.10	123021
3bmaA	407	46.18		
2i5nH	258	48.19	b.41.1.1,f.23.10.1	137064,137065
2hmaA	376	49.74		
1sumB	235	50.85	a.7.12.1	106025
1tcaA	317	52.83	c.69.1.17	34726
2h1qA	270	59.15		
2odeB	141	61.05		
1oivA	191	65.00	c.37.1.8	93076
2fu5C	183	67.53	c.37.1.8	134104
1qtnA	164	68.74	c.17.1.1	30999
1usgA	346	71.17	c.93.1.1	99864
2qubA	615	72.33		
1azsC	388	72.57	a.66.1.1,c.37.1.8	18203,32086
1k2fA	190	74.55	b.8.1.2	68054
2nogA	173	77.48		
1k0eA	453	77.64	d.161.1.1	67938
2os5A	119	78.51		
2liv	344	80.08		
1sat	471	80.43		
2p52A	196	81.39		
1ihp	438	82.01		
1uptB	60	82.34	a.193.1.1	99768
2axiA	115	84.75	a.42.1.1	127494
1uw0A	117	88.09	g.39.1.12	108063
1lla	628	88.22		
1rf6A	427	88.63	d.68.2.2	97366