# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	0.3892		
1vpbA	451	1.429	d.283.1.1	113950
1ibrB	462	6.543	a.118.1.1	19120
1vl4A	447	16.72	d.283.1.1	108718
1bqcA	302	19.07	c.1.8.3	28831
1a0pA	290	23.61	a.60.9.1,d.163.1.1	18105,42165
1tcaA	317	24.63	c.69.1.17	34726
1uw0A	117	30.51	g.39.1.12	108063
2bptA	861	30.53	a.118.1.1	128951
1yexA	186	32.44	c.47.1.10	123021
1ywqA	200	35.25	d.90.1.1	124162
3bmaA	407	36.55		
2pkhA	148	38.21		
2i5nH	258	54.44	b.41.1.1,f.23.10.1	137064,137065
1sumB	235	56.89	a.7.12.1	106025
2os5A	119	57.44		
1wmsA	177	58.17	c.37.1.8	109414
1azsC	388	66.04	a.66.1.1,c.37.1.8	18203,32086
1qtnA	164	67.10	c.17.1.1	30999
1xebA	150	67.82	d.108.1.1	115219
1lla	628	73.42		
2liv	344	74.67		
1usgA	346	78.26	c.93.1.1	99864
2h1qA	270	78.49		
1xg7A	250	78.56	a.96.1.6	115281
1uptB	60	81.58	a.193.1.1	99768
1k0eA	453	83.21	d.161.1.1	67938
2odeB	141	84.47		
1k0iA	394	85.45	c.3.1.2,d.16.1.2	67942,67943
2nogA	173	86.69