# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	2.303		
1vpbA	451	2.484	d.283.1.1	113950
2i5nH	258	10.54	b.41.1.1,f.23.10.1	137064,137065
1ibrB	462	13.80	a.118.1.1	19120
1xebA	150	19.08	d.108.1.1	115219
1xg7A	250	23.56	a.96.1.6	115281
1bqcA	302	27.12	c.1.8.3	28831
2ocgA	254	33.19		
1xqoA	256	33.23	a.96.1.6	115853
2c4wA	176	33.81		
1zd3A	555	36.64	c.108.1.2,c.69.1.11	124930,124931
2pkhA	148	43.06		
1ihjA	98	43.31	b.36.1.1	62382
1k2fA	190	52.06	b.8.1.2	68054
2vglA	621	57.09		
1uw0A	117	59.64	g.39.1.12	108063
1wzlA	585	61.38	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
2sakA	121	61.52	d.15.5.1	37711
1tkeA	224	65.10	d.15.10.1,d.67.1.1	112470,112471
1a0pA	290	66.56	a.60.9.1,d.163.1.1	18105,42165
1vl4A	447	67.57	d.283.1.1	108718
1k0iA	394	68.12	c.3.1.2,d.16.1.2	67942,67943
1uv4A	293	69.79	b.67.2.1	119705
2hmaA	376	71.37		
1broA	277	72.24	c.69.1.12	34700
1mxgA	435	78.24	b.71.1.1,c.1.8.1	85193,85194
2chgA	226	79.18		
1brt	277	80.06		
1r1dA	247	81.90	c.69.1.29	96813
1xo1A	291	83.11	a.60.7.1,c.120.1.2	18086,33356
4ts1A	319	87.14	c.26.1.1	31565