# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1pyaB	228	8.266		
3cloA	258	11.82		
1e79G	272	12.59	c.49.2.1	33158
1f07A	321	12.84	c.1.16.3	59560
1u00A	227	13.19	a.8.4.1,b.130.1.1	112900,112901
1yioA	208	13.97	a.4.6.2,c.23.1.1	123326,123327
2hp1A	432	14.62		
1v7rA	186	14.67	c.51.4.1	100482
3bojA	213	18.43		
1omp	370	18.69		
1azsA	220	18.94	d.58.29.1	39416
2chgA	226	19.68		
2au3A	407	20.88		
3c8nA	356	22.62		
2hmaA	376	22.85		
1qo0D	196	24.14	c.23.1.3	31125
2di3A	239	25.40		
2cy8A	453	26.97		
1r3dA	264	27.45	c.69.1.35	111680
1ub3A	220	28.19	c.1.10.1	88395
2bylA	439	28.64	c.67.1.4	129490
1xpkC	388	30.79	c.95.1.2,c.95.1.2	115747,115748
1mp8A	281	30.93	d.144.1.7	91384
1cp2A	269	33.19	c.37.1.10	32269
1xfuA	747	34.34		
2q4oA	215	34.81	c.129.1.1	139872
2owaA	138	36.08		
2pmiB	293	36.63		
1k82A	268	37.39	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1ovnA	248	37.90	a.71.1.1,c.47.1.7	93602,93603
2b81A	323	37.98		
1xfxA	777	42.06		
1ywuA	149	42.16	b.45.2.1	124164
1uj2A	252	43.16	c.37.1.6	99452
3boeA	210	43.84		
2e7uA	424	45.03		
1nqkA	381	45.48	c.1.16.4	92050
1lox	662	46.02		
1j09A	468	46.19	a.97.1.1,c.26.1.1	77025,77026
2fywA	267	47.09	c.135.1.1	134408
1feuA	206	47.59	b.53.1.1	59801
2c0gA	248	49.75	a.71.1.1,c.47.1.7	129590,129591
1nni1	174	49.90		
1jr2A	286	49.94	c.113.1.1	67111
1v33A	366	50.01	d.264.1.1	100278
3cc6A	281	51.68		
2j01Z	206	51.83		
1hw1A	239	52.56	a.4.5.6,a.78.1.1	16111,18441
1t35A	191	53.43	c.129.1.1	99108
1i36A	264	55.24	a.100.1.8,c.2.1.6	71108,71109
1l3iA	192	57.62	c.66.1.22	77676
3c85A	183	57.73		
2byjA	439	62.33	c.67.1.4	129483
1tyhA	248	62.38	a.132.1.3	107458
2q02A	272	66.98		
1musA	477	67.17	c.55.3.4	79494
2gsaA	432	68.36	c.67.1.4	34446
1anf	370	69.03		
2afhE	289	71.75	c.37.1.10	126683
1psdA	409	73.05	c.2.1.4,c.23.12.1,d.58.18.1	30097,31357,39354
1wa5B	530	74.58	a.118.1.1	114432
2ph3A	245	74.99		
1zbmA	280	76.97	c.94.1.1	124858
1w85A	368	77.05	c.36.1.11	114335
1atgA	231	77.18	c.94.1.1	35834
2dbyA	368	78.43		
1l1zA	274	79.43	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1xpmA	396	79.91	c.95.1.2,c.95.1.2	115759,115760
1sazA	381	84.57	c.55.1.2,c.55.1.2	118925,118926
2qkoA	215	85.51		
2o55A	258	85.72		
3xis	387	86.19		
1h5qA	265	87.31	c.2.1.2	60643
2fqxA	318	88.03		
2ae0X	345	88.52		
1wu7A	434	88.92	c.51.1.1,d.104.1.1	121275,121276
1z7dA	433	89.92	c.67.1.4	124600