Best Alignments for T0404

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2j9cA	3.8095e-14	2j9cA/T0404-2j9cA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ns1B	5.2036e-14	2ns1B/T0404-2ns1B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vfjA	7.6999e-14	1vfjA/T0404-1vfjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.5.1
2pii	9.2781e-14	2pii/T0404-2pii-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2eg2A	6.0059e-13	2eg2A/T0404-2eg2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o66A	3.2295e-12	2o66A/T0404-2o66A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gw8A	4.1401e-12	2gw8A/T0404-2gw8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gnkA	4.7370e-12	1gnkA/T0404-1gnkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.5.1
3bzqA	7.9285e-12	3bzqA/T0404-3bzqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dclA	1.3988e-01	2dclA/T0404-2dclA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dejA	4.6701e+00	2dejA/T0404-2dejA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cz9A	4.9638e+00	2cz9A/T0404-2cz9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1o51A	5.6274e+00	1o51A/T0404-1o51A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.5.4
2a2cA	3.3530e+01	2a2cA/T0404-2a2cA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1konA	4.1848e+01	1konA/T0404-1konA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.39.1.1
1lfpA	4.2552e+01	1lfpA/T0404-1lfpA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.39.1.1
1pieA	5.1047e+01	1pieA/T0404-1pieA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.14.1.5 d.58.26.7
1mw7A	6.1089e+01	1mw7A/T0404-1mw7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.39.1.1
2ph7A	6.1115e+01	2ph7A/T0404-2ph7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o3lA	6.3810e+01	2o3lA/T0404-2o3lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001