# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bzqA	114	0.004511		
2ns1B	116	0.005215		
2j9cA	119	0.006487		
1gnkA	112	0.007004	d.58.5.1	39073
2gw8A	114	0.007639		
2pii	112	0.009896		
2o66A	135	0.01015		
2eg2A	112	0.02386		
1vfjA	116	0.02542	d.58.5.1	113637
1o51A	114	0.2328	d.58.5.4	92480
2dclA	127	0.7024		
1nwbA	124	9.152	b.124.1.1	86296
1y23A	145	11.69	d.13.1.1	116394
3ladA	476	13.10	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2eo4A	149	15.67		
1qyaA	307	25.03	d.21.1.2,d.21.1.2	104653,104654
2ebnA	289	26.31	c.1.8.5	28990
1x1nA	524	29.14	c.1.8.1	121593
1sdjA	310	37.29	d.21.1.2,d.21.1.2	98807,98808
2nocA	99	37.84		
1ylxA	103	38.54	d.82.5.1	123677
1m7xA	617	40.81	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
1edtA	271	40.87	c.1.8.5	28993
1trbA	320	41.03	c.3.1.5,c.3.1.5	30529,30530
1itxA	419	45.40	c.1.8.5,d.26.3.1	71425,71426
3cb0A	173	45.88		
1ermA	263	46.38	e.3.1.1	42690
1w97L	246	50.30	c.55.1.11,c.55.1.11	114406,114407
1nh8A	304	52.86	c.94.1.1,d.58.5.3	80507,80508
1gesA	450	56.90	c.3.1.5,c.3.1.5,d.87.1.1	30473,30474,40168
2qswA	100	59.08		
3grs	478	61.31		
1n9bA	265	62.01	e.3.1.1	85463
1siqA	392	62.96	a.29.3.1,e.6.1.1	105585,105586
1zk7A	467	67.86		
1c93A	265	68.62	c.1.8.5	28998
1qqyA	130	73.81	d.2.1.2	36586
1jubA	311	74.39	c.1.4.1	90908
1nhpA	447	79.04	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
1nfpA	228	80.38	c.1.16.2	29555
1btl	263	85.04		
2iw2A	494	85.17		
1b9zA	516	85.87	b.3.1.1,c.1.8.1	22528,28798
1nhp	447	89.50