# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pii 112 0.01095 2ns1B 116 0.01475 2eg2A 112 0.01651 3bzqA 114 0.02676 2gw8A 114 0.03240 1gnkA 112 0.03587 d.58.5.1 39073 2o66A 135 0.05678 1vfjA 116 0.07272 d.58.5.1 113637 2j9cA 119 0.08657 1o51A 114 1.523 d.58.5.4 92480 2dclA 127 4.750 2yvlA 248 5.380 2p5xA 230 6.453 2h1rA 299 6.645 2atsA 292 8.555 c.1.10.1 127306 1dhpA 292 11.37 c.1.10.1 29097 1o8bA 219 11.99 c.124.1.4,d.58.40.1 81180,81181 1jndA 420 12.36 c.1.8.5,d.26.3.1 71757,71758 1qvbA 481 13.45 c.1.8.4 28983 2ojpA 292 14.15 1qzzA 374 16.63 a.4.5.29,c.66.1.12 96719,96720 2a6lA 292 18.71 c.1.10.1 126285 1nhkL 144 19.14 d.58.6.1 39142 1uwsA 489 19.57 c.1.8.4 108073 2hbvA 334 21.39 c.1.9.15 136320 1nkiA 135 21.53 d.32.1.2 91941 1fdyA 297 24.69 c.1.10.1 29071 1f5vA 240 25.02 d.90.1.1 40255 1g5aA 628 25.73 b.71.1.1,c.1.8.1 65152,65153 1nal1 297 25.75 1ff9A 450 26.20 c.2.1.3,d.81.1.2 30039,39954 3co8A 380 27.08 1vptA 348 28.07 c.66.1.25 34207 2a6nA 292 29.27 c.1.10.1 126289 1ve4A 206 29.72 c.94.1.1 120012 2hurA 142 29.80 1x19A 359 30.04 1s57A 153 33.49 d.58.6.1 112028 1o5kA 306 34.54 c.1.10.1 92504 1wkvA 389 34.57 c.79.1.1 120989 2ebnA 289 35.06 c.1.8.5 28990 3ce9A 354 37.12 1ulrA 88 37.84 d.58.10.1 113283 1sayA 361 38.76 c.2.1.4,c.23.12.2 30102,31362 1xmpA 170 40.45 c.23.8.1 115521 2ashA 381 40.60 2uyoA 310 41.11 1pjcA 361 44.16 c.2.1.4,c.23.12.2 30101,31361 2amhA 207 45.58 c.51.4.2 127019 2q16A 219 46.46 1tfrA 305 47.07 a.60.7.1,c.120.1.2 18081,33351 1d3gA 367 47.92 c.1.4.1 28600 2ehpA 126 48.29 2ga9A 297 48.40 c.66.1.25 134885 2hufA 393 48.48 1hl2A 297 49.59 c.1.10.1 83581 1cqmA 101 50.24 d.58.14.1 39321 1c93A 265 51.71 c.1.8.5 28998 1vrvA 101 52.82 1ehwA 162 52.95 d.58.6.1 39088 1vkrA 125 54.78 c.44.2.1 108689 2ayyA 121 55.22 c.23.1.6 127576 1xfdA 723 55.51 b.70.3.1,c.69.1.24 115251,115252 2fk8A 318 56.05 c.66.1.18 133648 1nbwB 117 56.31 c.51.3.2 80396 1yb1A 272 56.48 c.2.1.2 116599 2nqrA 411 56.96 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 1h49A 512 58.59 c.1.8.4 83477 1l5oA 356 60.52 c.39.1.1 77711 2b8qA 142 60.58 d.58.6.1 128103 1xqaA 113 60.64 d.32.1.2 115837 2b9eA 303 60.68 c.66.1.38 128124 1ris 101 62.78 1g8lA 411 63.49 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1spxA 278 64.64 c.2.1.2 98958 1y5hA 133 65.55 d.37.1.1,d.37.1.1 122635,122636 1ebdA 455 65.66 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 2bjdA 101 66.15 1oy1A 228 66.58 c.23.16.2 87548 1ml8A 134 66.78 d.227.1.2 85013 1lngA 87 66.82 d.201.1.1 74045 1u11A 182 66.95 c.23.8.1 107576 1uarA 285 67.13 c.46.1.2,c.46.1.2 107762,107763 1bkjA 240 67.71 d.90.1.1 40243 1vjfA 180 68.74 d.116.1.1 100809 1d0vA 356 69.11 c.39.1.1 32476 1fpzA 212 70.23 c.45.1.1 59976 2f60K 64 71.61 1vjoA 393 72.17 c.67.1.3 100827 1ixkA 315 73.84 c.66.1.38 90716 2nrqA 159 73.90 1e5xA 486 75.18 c.79.1.1 59283 1gowA 489 75.38 c.1.8.4 28981 1tr1A 447 79.57 c.1.8.4 28957 2abqA 306 79.80 c.72.1.1 126528 1o4vA 183 80.99 c.23.8.1 86628 1eyrA 228 81.15 c.68.1.13 34514 1q7rA 219 81.61 c.23.16.1 96054 3bfpA 194 81.71 2v74B 346 82.07 1n82A 331 82.15 c.1.8.3 91703 1npyA 271 83.52 c.2.1.7,c.58.1.5 85995,85996 1xkfA 133 84.70 d.37.1.1,d.37.1.1 122077,122078 2oycA 306 85.13 1ex2A 189 86.11 c.51.4.2 33225 1vpt 348 87.18 1h75A 81 87.33 c.47.1.1 60716 1zejA 293 87.64 2vojA 371 87.95 1f3fA 155 88.39 d.58.6.1 39101 1sy7A 715 88.74 c.23.16.3 112161 1x0pA 143 89.21 d.58.10.2 121552