# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ns1B	116	1.62e-14		
2j9cA	119	1.65e-14		
2pii	112	2.52e-14		
1vfjA	116	3.20e-14	d.58.5.1	113637
2gw8A	114	4.76e-13		
1gnkA	112	6.28e-13	d.58.5.1	39073
2o66A	135	6.30e-13		
2eg2A	112	1.25e-12		
3bzqA	114	1.48e-11		
2dclA	127	0.03157		
2dejA	350	0.9452		
2cz9A	350	1.763		
2a2cA	478	10.71		
1pieA	419	11.04	d.14.1.5,d.58.26.7	94706,94707
1konA	249	16.77	e.39.1.1	72823
2hfsA	332	19.91		
2gs8A	317	22.88		
2oi2A	292	22.96		
1kvkA	395	23.64	d.14.1.5,d.58.26.3	73060,73061
2f06A	144	31.64	d.58.18.11,d.58.18.11	132652,132653
1lfpA	249	34.90	e.39.1.1	73885
1kcqA	104	36.03	d.109.1.1	68449
2ozlA	365	36.73		
1ymqA	261	36.87	c.108.1.10	123707
1a8yA	367	39.25	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2rk0A	136	39.80		
2b0jA	358	43.23	a.100.1.11,c.2.1.6	127639,127640
1xr4A	509	51.00	c.124.1.2,c.124.1.2	115860,115861
3c96A	415	51.57		
1svyA	114	52.26	d.109.1.1	40831
1k92A	455	52.61	c.26.2.1,d.210.1.1	68325,68326
1xg0A	76	57.48	d.184.1.1	115273
1jeyB	565	57.88	b.131.1.2,c.62.1.4	90372,90373
2h1rA	299	57.94		
2jsxA	95	58.27		
1jndA	420	59.93	c.1.8.5,d.26.3.1	71757,71758
1mw7A	240	60.58	e.39.1.1	79557
2dc4A	165	60.69		
1nh8A	304	61.58	c.94.1.1,d.58.5.3	80507,80508
1x31C	206	65.43		
1rypA	243	68.86	d.153.1.4	41932
2i62A	265	69.37		
2nyvA	222	69.40		
1w24A	182	72.00	d.159.1.7	120579
2r9zA	463	73.03		
1y8cA	246	74.50	c.66.1.43	116563
2aiqA	231	76.15		
2d59A	144	77.97	c.2.1.8	131266
1vloA	381	83.20	b.44.2.1,d.250.1.1	108838,108839
1nzaA	103	84.29	d.58.5.2	86444
1b5pA	385	84.35	c.67.1.1	90403
1qmgA	524	86.69	a.100.1.2,c.2.1.6	18785,30182
2hk9A	275	87.07		
1j3mA	129	88.70	d.129.7.1	103836
2he7A	283	89.16		
1wuuA	399	89.63	d.14.1.5,d.58.26.7	114900,114901