# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2j9cA 119 8.85e-10 2ns1B 116 3.59e-09 1vfjA 116 7.22e-09 d.58.5.1 113637 2pii 112 1.03e-08 2o66A 135 2.34e-08 2eg2A 112 3.73e-08 3bzqA 114 9.36e-08 2gw8A 114 1.13e-07 1gnkA 112 2.16e-07 d.58.5.1 39073 2dclA 127 0.02515 2rjzA 147 1.934 2jsxA 95 2.475 1cqmA 101 3.644 d.58.14.1 39321 2dejA 350 4.220 2ditA 112 5.753 d.58.7.1 131533 2d3qA 442 6.752 d.58.4.14 131214 1o8bA 219 7.837 c.124.1.4,d.58.40.1 81180,81181 2rb9A 334 7.982 2cz9A 350 8.244 2anrA 178 8.502 2h1rA 299 9.054 2bbeA 108 9.572 1ta9A 450 10.66 1mw7A 240 11.78 e.39.1.1 79557 1u0sA 86 12.03 d.58.24.1 107565 1p1lA 102 12.28 d.58.5.2 87695 1vj7A 393 13.64 a.211.1.1,d.218.1.8 100801,100802 2bjdA 101 13.98 1kr4A 125 14.27 d.58.5.2 72889 2nrqA 159 14.70 2pjmA 226 15.28 2j5aA 110 15.58 2cyyA 151 15.73 a.4.5.32,d.58.4.2 131028,131029 1kvkA 395 16.79 d.14.1.5,d.58.26.3 73060,73061 1uj6A 227 17.44 c.124.1.4,d.58.40.1 107898,107899 1kafA 108 17.47 d.199.1.1 68372 2gffA 106 17.84 2cviA 83 18.31 2oi2A 292 18.33 2yvlA 248 19.38 1x7vA 99 19.61 d.58.4.11 109501 1kzfA 230 22.43 d.108.1.3 73354 2gvkA 317 24.09 d.58.4.14 135782 1o54A 277 24.43 c.66.1.13 92482 1vicA 262 24.71 c.68.1.13 100756 1x0pA 143 24.78 d.58.10.2 121552 1y8cA 246 24.94 c.66.1.43 116563 1xtzA 264 25.13 1d5tA 433 25.91 c.3.1.3,d.16.1.6 30422,37986 2yxdA 183 26.30 1rxyA 253 27.60 c.56.2.1 98065 1sc6A 404 28.25 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1iujA 106 29.98 d.58.4.5 90701 2cfxA 144 30.40 a.4.5.32,d.58.4.2 130395,130396 2pd1A 104 30.73 1g5cA 170 30.83 c.53.2.1 60264 1ujnA 348 32.23 e.22.1.1 99460 1ulrA 88 32.35 d.58.10.1 113283 2nuhA 118 32.60 1konA 249 32.68 e.39.1.1 72823 1l0wA 580 33.28 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1ewkA 490 35.37 c.93.1.1 35712 2gukA 120 35.93 1k66A 149 37.49 c.23.1.1 90941 2b8qA 142 37.83 d.58.6.1 128103 2ojpA 292 37.88 1oscA 126 38.10 d.58.5.2 93490 2z1uA 343 39.28 1w2iA 91 39.69 d.58.10.1 109127 2fb0A 94 39.69 1tz0A 114 40.21 d.58.4.5 107463 3bn4A 122 41.67 2rmcA 182 41.95 b.62.1.1 27491 2i6gA 199 41.99 c.66.1.44 137096 2uyoA 310 42.11 1yb1A 272 42.70 c.2.1.2 116599 2a10A 125 44.40 d.58.56.1 125965 2ougA 162 44.50 2p91A 285 44.76 2q3pA 112 44.85 d.58.4.4 139798 1zvpA 133 44.88 d.58.18.9,d.58.18.9 125714,125715 2bycA 137 48.43 d.58.10.2 129476 2iizA 312 48.62 d.58.4.14 137444 1nzaA 103 48.70 d.58.5.2 86444 1ehwA 162 51.85 d.58.6.1 39088 2id1A 130 55.61 1jndA 420 56.11 c.1.8.5,d.26.3.1 71757,71758 2cygA 312 56.45 c.1.8.3 131025 2p5mA 83 56.70 2pwyA 258 58.42 2ewhA 98 58.74 d.58.56.1 132466 2hurA 142 58.83 1cc8A 73 58.88 d.58.17.1 39343 2o5aA 125 59.25 2hhgA 139 60.73 1qzzA 374 63.33 a.4.5.29,c.66.1.12 96719,96720 1eziA 228 63.40 c.68.1.13 34512 1ukuA 102 66.00 d.58.5.2 99533 1fpzA 212 66.48 c.45.1.1 59976 2hfsA 332 66.51 1jsxA 207 66.60 c.66.1.20 71846 1vk3A 615 67.68 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2ggoA 401 67.70 1vmbA 140 68.50 d.58.14.1 113672 3bfpA 194 68.94 2dbbA 151 68.99 2zbcA 83 69.23 1lk5A 229 69.67 c.124.1.4,d.58.40.1 73960,73961 2iygA 124 69.74 2ayyA 121 70.50 c.23.1.6 127576 2qfjA 216 71.60 2aqjA 538 71.97 2pg9A 337 72.54 2b9eA 303 73.19 c.66.1.38 128124 2bh1A 250 73.74 c.55.1.11,c.55.1.11 128506,128507 2ftrA 108 74.78 d.58.4.15 134077 1f5vA 240 75.34 d.90.1.1 40255 1a79A 171 75.47 c.52.2.1,d.75.1.1 33340,39739 2axyA 73 75.62 d.51.1.1 127532 1spxA 278 76.75 c.2.1.2 98958 2qezA 455 77.96 1pbeA 394 78.42 c.3.1.2,d.16.1.2 30338,37869 1zq9A 285 78.65 c.66.1.24 125505 1qsgA 265 78.81 c.2.1.2 29935 1rkiA 102 80.01 d.308.1.2 118776 1ro5A 201 80.59 d.108.1.3 105023 2atzA 180 80.61 d.264.1.3 127317 2v1xA 591 80.78 1uwsA 489 82.10 c.1.8.4 108073 2djwA 92 82.43 1mpyA 307 83.14 d.32.1.3,d.32.1.3 38508,38509 2z2mC 125 84.27 1lufA 343 84.56 d.144.1.7 78223 2zc3C 125 85.47 2pe8A 105 85.68 1t1vA 93 86.11 c.47.1.14 106278 1jq5A 370 87.70 e.22.1.2 67084 2egtA 132 88.76 1ybtA 184 89.62