# List of top-scoring protein chains for T0404.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eg2A	112	3.85e-14		
1hwuA	112	3.05e-13	d.58.5.1	83633
2gw8A	114	3.82e-13		
2piiA	112	4.01e-13	d.58.5.1	39071
1gnkA	112	2.65e-12	d.58.5.1	39073
2j9dE	119	2.77e-12		
2ns1B	116	2.77e-12		
2j9cA	119	2.79e-12		
3bzqA	114	3.55e-12		
2gnkA	112	4.21e-12	d.58.5.1	39075
2v5hG	112	9.04e-12		
1ul3A	112	9.94e-12	d.58.5.1	99534
1qy7A	112	1.55e-11	d.58.5.1	96575
1vfjA	116	4.62e-11	d.58.5.1	113637
2o66A	135	1.16e-10		
2cz4A	119	0.000134	d.58.5.1	131035
1o51A	114	0.02583	d.58.5.4	92480
2dclA	127	0.9702		
3ce8A	120	2.548		
2okoA	385	6.718		
2z1vA	386	6.718		
1wkdA	386	7.479	c.1.20.1	29664
1efzA	386	7.511	c.1.20.1	29659
1wkeA	386	7.577	c.1.20.1	29663
1ozqA	386	7.584	c.1.20.1	93854
1wkfA	386	7.597	c.1.20.1	29662
1y5wA	385	7.603	c.1.20.1	122654
1r5yA	386	7.603	c.1.20.1	97134
1pxgA	382	8.058	c.1.20.1	95287
2nqzA	385	8.270		
2nsoA	386	8.270		
2cw6A	298	14.56		
1ffxA	451	23.08	i.10.1.1	46007
1sa0A	451	23.13	c.32.1.1,d.79.2.1	98769,98770
1jffA	451	25.41	c.32.1.1,d.79.2.1	62932,62933
1tvkA	440	25.51	c.32.1.1,d.79.2.1	107362,107363
2ftpA	302	49.86		
1tj6A	118	57.03	b.55.1.4	119286
2gx8A	397	60.25	c.135.1.1	135825
2mm1A	153	61.62	a.1.1.2	15203
1to3A	304	62.49	c.1.10.1	107161
1xodA	118	66.64	b.55.1.4	122202
1myiA	153	70.32	a.1.1.2	15175
1mwcA	153	70.43	a.1.1.2	15157
1myhA	153	70.66	a.1.1.2	15177
1wg1A	88	76.83	d.58.7.1	114599
2helA	306	86.58		
2pd6A	264	88.24