# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pii	112	1.65e-16		
2j9cA	119	2.32e-16		
2ns1B	116	2.86e-16		
1vfjA	116	4.43e-16	d.58.5.1	113637
2gw8A	114	2.89e-15		
3bzqA	114	4.00e-15		
2o66A	135	4.91e-15		
1gnkA	112	5.06e-15	d.58.5.1	39073
2eg2A	112	1.17e-14		
1o51A	114	0.08564	d.58.5.4	92480
2dejA	350	0.1689		
2cz9A	350	0.5018		
2dclA	127	1.429		
1lfpA	249	2.328	e.39.1.1	73885
2a2cA	478	3.479		
1q9uA	130	3.514	d.129.7.1	96314
2hkeA	380	5.846		
1konA	249	5.968	e.39.1.1	72823
2idbA	505	13.30	b.45.1.3,d.333.1.1	137270,137271
1mw7A	240	13.81	e.39.1.1	79557
2oi2A	292	17.55		
2hfsA	332	18.00		
1vjqA	79	20.50	k.43.1.1	100830
1pieA	419	20.77	d.14.1.5,d.58.26.7	94706,94707
2hs3A	603	29.46	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
2ehhA	294	30.87		
2qdxA	257	33.62		
1wuuA	399	34.94	d.14.1.5,d.58.26.7	114900,114901
2ph7A	246	36.04		
2dtjA	178	36.63		
2i33A	258	37.31		
1fnc	314	40.98		
2cduA	452	41.67		
2iwbA	246	44.55		
2e67A	264	45.88		
1nh8A	304	50.03	c.94.1.1,d.58.5.3	80507,80508
1zm0A	114	51.09	b.55.1.1	125276
1w85A	368	53.20	c.36.1.11	114335
1tv8A	340	53.22	c.1.28.3	107352
1vquA	374	54.68		
2jsxA	95	55.77		
1naqA	112	57.77	d.58.5.2	91761
2eenA	183	59.46		
1g60A	260	59.60	c.66.1.11	70151
1uekA	275	60.92	d.14.1.5,d.58.26.5	88483,88484
2o5aA	125	61.48		
2bgiA	272	63.10		
1kafA	108	63.10	d.199.1.1	68372
1j3mA	129	65.07	d.129.7.1	103836
1a8pA	258	65.43	b.43.4.2,c.25.1.1	25654,31544
3bkbA	377	65.90		
1o5kA	306	66.29	c.1.10.1	92504
2r85A	334	67.74		
1xg5A	279	68.22	c.2.1.2	115277
1ou8A	111	68.60	b.136.1.1	93543
1nhp	447	69.12		
2cpgA	45	69.38	a.43.1.3	17455
2d59A	144	71.53	c.2.1.8	131266
1u8sA	192	71.96	d.58.18.5,d.58.18.5	107737,107738
1bx1A	314	73.25	b.43.4.2,c.25.1.1	25629,31519
1rl6A	177	74.53	d.141.1.1,d.141.1.1	41473,41474
2ditA	112	74.60	d.58.7.1	131533
2h9aB	310	75.25		
3bhdA	234	75.46		
1odkA	235	77.05	c.56.2.1	86863
1shuX	182	77.55	c.62.1.1	98882
1svyA	114	78.03	d.109.1.1	40831
2nrkA	173	80.53		
2cdqA	510	80.67	c.73.1.3,d.58.18.10,d.58.18.10	130290,130291,130292
1x3mA	415	81.93	c.55.1.2,c.55.1.2	121664,121665
3bv0A	437	83.31		
2i6gA	199	83.51	c.66.1.44	137096
3bgvA	313	84.32		
1xbyA	216	87.89	c.1.2.3	121846
2cveA	191	88.03	d.14.1.11,d.58.11.2	130869,130870
1u69A	163	88.20	d.32.1.7	107699
2ae2A	260	89.08	c.2.1.2	29945