Best Alignments for T0404

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2gw8A/T0404-2gw8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gw8A/T0404-2gw8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.4854e-051.09e-15
2ns1B/T0404-2ns1B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ns1B/T0404-2ns1B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1905e-056.83e-19
3bzqA/T0404-3bzqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3bzqA/T0404-3bzqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2180e-042.55e-18
2eg2A/T0404-2eg2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2eg2A/T0404-2eg2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8660e-045.64e-18
1gnkA/T0404-1gnkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gnkA/T0404-1gnkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1164e-044.17e-16 2pii d.58.5.1
2j9cA/T0404-2j9cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2j9cA/T0404-2j9cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2565e-043.41e-17
2o66A/T0404-2o66A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2o66A/T0404-2o66A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3727e-032.85e-13
2dclA/T0404-2dclA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2dclA/T0404-2dclA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9176e-021.35e-08
2v5hG/T0404-2v5hG-t2k-global-adpstyle1.a2m 2v5hG/T0404-2v5hG-t2k-global-adpstyle1.al 1.2946e+003.41e-08
2dc1A/T0404-2dc1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2dc1A/T0404-2dc1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8544e+002.52e-09

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001