# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2pii 112 3.28e-05 2pii 2gw8A 114 5.75e-05 2j9cA 119 7.54e-05 2ns1B 116 8.37e-05 3bzqA 114 1.23e-04 2eg2A 112 1.32e-04 1gnkA 112 1.60e-04 2pii d.58.5.1 39073 2o66A 135 5.05e-04 1o51A 114 9.89e-04 d.58.5.4 92480 2dclA 127 7.37e-03 1vfjA 116 1.26e-02 d.58.5.1 113637 1vdhA 249 1.32e+00 d.58.4.10 108523 1k1xA 659 3.22e+00 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2d42A 249 3.26e+00 1xg4A 295 3.47e+00 3b9oA 440 3.61e+00 1mumA 295 3.76e+00 c.1.12.7 85108 2h57A 190 4.02e+00 1wwlA 312 4.27e+00 2b9wA 424 5.83e+00 1y8qA 346 6.01e+00 1ulrA 88 6.82e+00 d.58.10.1 113283 1pj5A 830 6.90e+00 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1vm7A 311 7.44e+00 c.72.1.1 108884 2a2cA 478 1.06e+01 2dc1A 236 1.09e+01 1f74A 293 1.10e+01 1nal3 c.1.10.1 29079 1zkkA 167 1.17e+01 2f1rA 171 1.19e+01 1r89A 437 1.26e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2hfsA 332 1.41e+01 1s2wA 295 1.41e+01 c.1.12.7 98407 1gv9A 260 1.43e+01 b.29.1.13 70596 2qyxA 238 1.43e+01 2id1A 130 1.45e+01 3b8iA 287 1.45e+01 2jepA 395 1.50e+01 2ghpA 292 1.67e+01 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1pymA 295 1.77e+01 1pymA c.1.12.7 29308 1gu7A 364 1.80e+01 b.35.1.2,c.2.1.1 83321,83322 2dejA 350 1.89e+01 1wvqA 167 1.95e+01 2pgcA 207 2.11e+01 1mb4A 370 2.18e+01 c.2.1.3,d.81.1.1 78908,78909 1rsgA 516 2.23e+01 2cz9A 350 2.26e+01 1pujA 282 2.55e+01 c.37.1.8 88294 1vjqA 79 2.63e+01 k.43.1.1 100830 1j3bA 529 2.64e+01 c.91.1.1,c.109.1.1 77071,77072 1w2iA 91 2.67e+01 d.58.10.1 109127 1qqrA 138 2.74e+01 1bmlC d.15.5.1 37721 1t0tV 248 2.82e+01 d.58.4.10 106229 1o63A 219 2.84e+01 c.94.1.1 92540 1e6mA 128 2.93e+01 3chy c.23.1.1 31039 1urrA 102 2.94e+01 d.58.10.1 107998 1nv8A 284 3.03e+01 c.66.1.30 86224 2bjdA 101 3.05e+01 1ab5A 125 3.13e+01 3chy c.23.1.1 31056 1sqgA 429 3.14e+01 a.79.1.3,c.66.1.38 105912,105913 2bkxA 242 3.22e+01 6pfkA 319 3.32e+01 3pfk c.89.1.1 35583 1josA 128 3.40e+01 d.52.7.1 84191 1dtoA 221 3.46e+01 1dtoA b.91.1.1 28405 1jbeA 128 3.55e+01 3chy c.23.1.1 62845 1qd9A 124 3.56e+01 1qu9A d.79.1.1 39758 1wvfA 520 3.57e+01 d.58.32.1,d.145.1.1 121337,121338 3chy 128 3.58e+01 3chy 2b0mA 393 3.64e+01 c.1.4.1 127644 2nygA 273 3.65e+01 1jw9B 249 3.70e+01 c.111.1.1 67377 1uae 419 3.73e+01 1uae 1ee9A 320 3.79e+01 1ee9A c.2.1.7,c.58.1.2 30288,33936 1ep3A 311 3.87e+01 2dorA c.1.4.1 28597 2r2cA 183 3.91e+01 1fseA 74 4.00e+01 1fseA a.4.6.2 60000 1d3gA 367 4.01e+01 1d3gA c.1.4.1 28600 1ylxA 103 4.05e+01 d.82.5.1 123677 1j24A 143 4.15e+01 c.52.1.20 84008 1ar1B 298 4.16e+01 2occB b.6.1.2,f.17.2.1 23037,43619 1fcqA 350 4.26e+01 c.1.8.9 65006 1apyB 141 4.27e+01 1apyB 2ebeA 106 4.29e+01 1x8dA 104 4.29e+01 1t4bA 367 4.30e+01 c.2.1.3,d.81.1.1 106406,106407 1u8tA 129 4.36e+01 c.23.1.1 113192 1s7mA 174 4.44e+01 b.144.1.1 98649 1zj8A 566 4.47e+01 1fsiA 189 4.61e+01 1fsiA d.61.1.1 39536 1s28A 132 4.63e+01 d.198.1.1 105223 1l3lA 234 4.70e+01 a.4.6.2,d.110.5.1 73541,73542 2p0oA 372 4.79e+01 1y63A 184 4.81e+01 c.37.1.1 116494 2v3zA 440 4.81e+01 2bwvA 440 4.82e+01 c.55.2.1,d.127.1.1 129387,129388 1wl9A 440 4.83e+01 c.55.2.1,d.127.1.1 120998,120999 2g5cA 281 4.93e+01 a.100.1.12,c.2.1.6 134646,134647 1edzA 320 5.03e+01 1ee9A c.2.1.7,c.58.1.2 30287,33935 1eswA 500 5.11e+01 1cwyA c.1.8.1 59500 2bi7A 384 5.29e+01 1ejdA 419 5.36e+01 1uae d.68.2.2 39576 1vddA 228 5.39e+01 e.49.1.1 108519 2dt9A 167 5.46e+01 3pfk 319 5.62e+01 3pfk 2obpA 96 5.66e+01 1oxkB 134 5.78e+01 c.23.1.1 93691 1cwyA 500 5.83e+01 1cwyA c.1.8.1 28789 1n13B 113 5.86e+01 1r5yA 386 5.87e+01 c.1.20.1 97134 1pud 386 5.87e+01 1pud 1pxgA 382 5.88e+01 c.1.20.1 95287 2uwaA 274 5.90e+01 1x7oA 287 5.92e+01 2z7xB 520 6.05e+01 2gphA 364 6.13e+01 3b6eA 216 6.13e+01 3bw6A 144 6.29e+01 2elcA 329 6.39e+01 2rjoA 332 6.40e+01 1jxhA 288 6.41e+01 c.72.1.2 67415 2ocgA 254 6.50e+01 1bmlC 362 6.55e+01 1bmlC d.15.5.1,d.15.5.1,d.15.5.1 37729,37730,37731 1wi1A 126 6.56e+01 b.55.1.1 114658 1ylhA 560 6.79e+01 1xc3A 302 6.93e+01 c.55.1.10,c.55.1.10 115102,115103 2r25B 133 6.98e+01 1h8mA 140 7.11e+01 1h8mA d.110.4.1 60782 2gkgA 127 7.22e+01 1ii2A 524 7.33e+01 c.91.1.1,c.109.1.1 66146,66147 1oniA 137 7.48e+01 d.79.1.1 87144 2qr7A 342 7.50e+01 1tvkA 440 7.54e+01 c.32.1.1,d.79.2.1 107362,107363 2cjaA 522 7.56e+01 2pezA 179 7.59e+01 2h3lA 103 7.62e+01 b.36.1.1 136046 1qp8A 303 7.63e+01 1qp8A c.2.1.4,c.23.12.1 30092,31352 1jscA 630 7.65e+01 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 2ivyA 101 7.86e+01 2hf9A 226 7.87e+01 2eq7C 40 7.90e+01 1e08A 371 7.95e+01 i.4.1.1 45914