# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gw8A 114 1.58e-05 2pii 112 2.99e-05 2pii 2ns1B 116 4.98e-05 2j9cA 119 7.38e-05 1gnkA 112 9.50e-05 2pii d.58.5.1 39073 2eg2A 112 1.03e-04 2o66A 135 3.13e-04 3bzqA 114 3.68e-04 1o51A 114 1.33e-03 d.58.5.4 92480 1vfjA 116 2.94e-03 d.58.5.1 113637 2dclA 127 6.34e-03 2d42A 249 2.45e+00 3b9oA 440 3.01e+00 1mb4A 370 3.16e+00 c.2.1.3,d.81.1.1 78908,78909 2b9wA 424 3.41e+00 2qyxA 238 3.99e+00 1xg4A 295 4.28e+00 2ghpA 292 4.36e+00 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1vm7A 311 7.47e+00 c.72.1.1 108884 2dejA 350 7.55e+00 2cz9A 350 7.60e+00 2f1rA 171 8.26e+00 1mumA 295 8.43e+00 c.1.12.7 85108 2jepA 395 8.50e+00 1zkkA 167 8.73e+00 1t4bA 367 9.73e+00 c.2.1.3,d.81.1.1 106406,106407 1vdhA 249 1.10e+01 d.58.4.10 108523 2dc1A 236 1.30e+01 1b01A 45 1.36e+01 2cpgA a.43.1.3 17458 1pj5A 830 1.36e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1wwlA 312 1.40e+01 2cpgA 45 1.47e+01 2cpgA a.43.1.3 17455 2id1A 130 1.51e+01 1ulrA 88 1.64e+01 d.58.10.1 113283 1y8qA 346 1.65e+01 1brmA 367 1.81e+01 1brmA c.2.1.3,d.81.1.1 30030,39945 2a2cA 478 1.82e+01 2dt9A 167 1.86e+01 2bj7A 138 1.88e+01 a.43.1.3,d.58.18.4 128608,128609 6pfkA 319 1.91e+01 3pfk c.89.1.1 35583 1s2wA 295 1.93e+01 c.1.12.7 98407 2gphA 364 2.18e+01 1tvoA 368 2.23e+01 1pxgA 382 2.35e+01 c.1.20.1 95287 3b8iA 287 2.36e+01 1r5yA 386 2.39e+01 c.1.20.1 97134 3pfk 319 2.45e+01 3pfk 1qd9A 124 2.50e+01 1qu9A d.79.1.1 39758 2nrkA 173 2.52e+01 1jffA 451 2.57e+01 c.32.1.1,d.79.2.1 62932,62933 1v4sA 455 2.60e+01 c.55.1.3,c.55.1.3 100309,100310 1n13B 113 2.61e+01 1x8dA 104 2.62e+01 1urrA 102 2.65e+01 d.58.10.1 107998 1q9uA 130 2.71e+01 d.129.7.1 96314 1r89A 437 2.83e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2uwaA 274 2.91e+01 1josA 128 2.97e+01 d.52.7.1 84191 2hfsA 332 2.97e+01 1pud 386 2.98e+01 1pud 1dtoA 221 2.98e+01 1dtoA b.91.1.1 28405 2qr7A 342 3.02e+01 1y63A 184 3.12e+01 c.37.1.1 116494 1s7mA 174 3.18e+01 b.144.1.1 98649 1gv9A 260 3.35e+01 b.29.1.13 70596 2f46A 156 3.36e+01 2ia0A 171 3.37e+01 1oniA 137 3.43e+01 d.79.1.1 87144 1ae1A 273 3.44e+01 1bdb c.2.1.2 29943 1wvqA 167 3.58e+01 1ep3A 311 3.59e+01 2dorA c.1.4.1 28597 1bg6 359 3.62e+01 1bg6 1bg6A 359 3.62e+01 a.100.1.5,c.2.1.6 18810,30214 2g5cA 281 3.62e+01 a.100.1.12,c.2.1.6 134646,134647 1nv8A 284 3.68e+01 c.66.1.30 86224 2bkxA 242 3.71e+01 2gkgA 127 3.73e+01 2ae2A 260 3.74e+01 1bdb c.2.1.2 29945 1rj9A 304 3.75e+01 a.24.13.1,c.37.1.10 97553,97554 1rsgA 516 3.77e+01 2fhqA 141 3.80e+01 b.45.1.1 133497 2jxtA 86 3.81e+01 1fseA 74 3.87e+01 1fseA a.4.6.2 60000 2eihA 343 3.91e+01 1pvmA 184 3.99e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1zy4A 303 4.07e+01 2pgcA 207 4.08e+01 1pujA 282 4.08e+01 c.37.1.8 88294 1vjqA 79 4.11e+01 k.43.1.1 100830 1tuvA 114 4.17e+01 d.58.4.11 112665 1uae 419 4.32e+01 1uae 1pymA 295 4.33e+01 1pymA c.1.12.7 29308 1em8A 147 4.34e+01 c.128.1.1 90457 1m2rA 327 4.36e+01 d.144.1.7 84760 2ebeA 106 4.46e+01 2j7tA 302 4.54e+01 1btl 263 4.61e+01 1btl 1f74A 293 4.63e+01 1nal3 c.1.10.1 29079 1rz1A 161 4.66e+01 b.45.1.2 98124 1w2iA 91 4.67e+01 d.58.10.1 109127 1gu7A 364 4.70e+01 b.35.1.2,c.2.1.1 83321,83322 2b33A 140 4.72e+01 d.79.1.1 127765 1jy5A 212 4.73e+01 d.124.1.1 71940 1ermA 263 4.77e+01 1btl e.3.1.1 42690 1fqgA 263 4.77e+01 1btl e.3.1.1 42699 1m40A 263 4.79e+01 e.3.1.1 74437 1qqrA 138 4.82e+01 1bmlC d.15.5.1 37721 1jbeA 128 4.83e+01 3chy c.23.1.1 62845 1ooeA 236 4.83e+01 c.2.1.2 87196 1om1A 332 5.01e+01 d.144.1.7 93347 3chy 128 5.24e+01 3chy 1ee9A 320 5.37e+01 1ee9A c.2.1.7,c.58.1.2 30288,33936 2q7eA 291 5.43e+01 1tvkA 440 5.50e+01 c.32.1.1,d.79.2.1 107362,107363 1ylxA 103 5.64e+01 d.82.5.1 123677 2awfA 172 5.64e+01 d.20.1.1 127432 1bia 321 5.69e+01 1bia 1biaA 321 5.69e+01 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1fwkA 296 5.70e+01 1fwkA d.14.1.5,d.58.26.1 37576,39398 2fug5 207 5.75e+01 2yv1A 294 5.79e+01 1ryqA 69 5.79e+01 g.41.9.3 105126 1apyB 141 5.81e+01 1apyB 1ejdA 419 5.87e+01 1uae d.68.2.2 39576 1r6yA 115 5.95e+01 d.58.4.11 111711 2obpA 96 5.95e+01 2bikB 313 5.99e+01 1o57A 291 6.00e+01 a.4.5.40,c.61.1.1 92483,92484 1wi1A 126 6.09e+01 b.55.1.1 114658 2r2cA 183 6.13e+01 1uu1A 335 6.29e+01 c.67.1.1 99993 1d3gA 367 6.30e+01 1d3gA c.1.4.1 28600 1fzqA 181 6.31e+01 1hurA c.37.1.8 32060 2ragA 417 6.38e+01 1sqgA 429 6.40e+01 a.79.1.3,c.66.1.38 105912,105913 1l3lA 234 6.42e+01 a.4.6.2,d.110.5.1 73541,73542 2r25B 133 6.48e+01 1zj8A 566 6.49e+01 1xg0A 76 6.57e+01 d.184.1.1 115273 1wvfA 520 6.58e+01 d.58.32.1,d.145.1.1 121337,121338 2k29A 53 6.60e+01 2fncA 381 6.63e+01 1q5fA 156 6.77e+01 d.24.1.1 104536 1b5wA 130 6.77e+01 3lzt d.2.1.2 36557 2pjzA 263 6.78e+01 1zgzA 122 6.88e+01 c.23.1.1 125065 3b6eA 216 6.89e+01 1scuA 288 6.90e+01 2scuA c.2.1.8,c.23.4.1 30307,31135 1iruK 201 6.90e+01 d.153.1.4 71362 1b5vA 130 6.92e+01 3lzt d.2.1.2 36563 1dosA 358 6.97e+01 1dosA c.1.10.2 29175 1edzA 320 6.98e+01 1ee9A c.2.1.7,c.58.1.2 30287,33935 1q8iA 783 7.01e+01 c.55.3.5,e.8.1.1 96208,96209 1mp8A 281 7.07e+01 d.144.1.7 91384 2b0mA 393 7.16e+01 c.1.4.1 127644 1fcqA 350 7.26e+01 c.1.8.9 65006 2o18A 340 7.38e+01 1oxkB 134 7.38e+01 c.23.1.1 93691 2h57A 190 7.41e+01 1h8mA 140 7.47e+01 1h8mA d.110.4.1 60782 1q74A 303 7.47e+01 c.134.1.1 96019 2qg5A 294 7.51e+01 2h3lA 103 7.62e+01 b.36.1.1 136046 1fsiA 189 7.63e+01 1fsiA d.61.1.1 39536 1b7rA 130 7.63e+01 3lzt d.2.1.2 36436 1mfgA 95 7.64e+01 b.36.1.1 79043 1b7nA 130 7.64e+01 3lzt d.2.1.2 36468 1u0sY 118 7.72e+01 c.23.1.1 107566 1t90A 486 7.72e+01 1e6mA 128 7.78e+01 3chy c.23.1.1 31039 1b7pA 130 7.87e+01 3lzt d.2.1.2 36551 2zceA 291 7.89e+01 1b5yA 130 7.89e+01 3lzt d.2.1.2 36570 1b7mA 130 7.89e+01 3lzt d.2.1.2 36569