Best Alignments for T0404

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2j9cA/T0404-2j9cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2j9cA/T0404-2j9cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3293e-173.51e-54
2eg2A/T0404-2eg2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2eg2A/T0404-2eg2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0699e-163.29e-56
2pii/T0404-2pii-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2pii/T0404-2pii-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9016e-161.43e-54 2pii
2ns1B/T0404-2ns1B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ns1B/T0404-2ns1B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1706e-161.25e-48
2gw8A/T0404-2gw8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gw8A/T0404-2gw8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.6109e-161.10e-51
3bzqA/T0404-3bzqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3bzqA/T0404-3bzqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1072e-151.85e-49
2o66A/T0404-2o66A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2o66A/T0404-2o66A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5287e-143.19e-46
2j9dE/T0404-2j9dE-t04-global-adpstyle1.a2m 2j9dE/T0404-2j9dE-t04-global-adpstyle1.al 4.6913e-092.46e-28
2v5hG/T0404-2v5hG-t04-global-adpstyle1.a2m 2v5hG/T0404-2v5hG-t04-global-adpstyle1.al 1.2135e-082.46e-28
2dclA/T0404-2dclA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2dclA/T0404-2dclA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1505e-031.07e-18

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001