# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2pii 112 1.31e-20 2pii 2j9cA 119 9.09e-20 2eg2A 112 9.29e-20 2ns1B 116 1.43e-18 3bzqA 114 3.49e-18 2gw8A 114 4.33e-18 1gnkA 112 3.30e-17 2pii d.58.5.1 39073 1vfjA 116 3.39e-17 d.58.5.1 113637 2o66A 135 3.29e-16 1o51A 114 6.77e-05 d.58.5.4 92480 2dclA 127 4.02e-03 1xg4A 295 1.70e+00 2hfsA 332 1.91e+00 1pj5A 830 2.05e+00 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1vjqA 79 2.14e+00 k.43.1.1 100830 1mumA 295 2.24e+00 c.1.12.7 85108 1zkcA 197 2.25e+00 b.62.1.1 125182 1p9qC 256 2.80e+00 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1t95A 240 2.95e+00 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 2i82A 217 3.38e+00 1kkhA 317 3.84e+00 d.14.1.5,d.58.26.3 72645,72646 1jg1A 235 4.28e+00 c.66.1.7 66661 1vm7A 311 4.44e+00 c.72.1.1 108884 2dt5A 211 4.45e+00 a.4.5.38,c.2.1.12 131708,131709 2o5aA 125 5.20e+00 1yzhA 214 5.38e+00 c.66.1.53 124277 2p7oA 133 5.61e+00 1xcbA 211 6.24e+00 a.4.5.38,c.2.1.12 109552,109553 2h57A 190 6.33e+00 1rhyA 202 6.38e+00 d.14.1.9,d.14.1.9 97491,97492 3borA 237 7.13e+00 1yb2A 275 7.42e+00 c.66.1.13 122868 1kr4A 125 7.46e+00 d.58.5.2 72889 2gphA 364 7.53e+00 3bfpA 194 7.74e+00 1tvoA 368 7.81e+00 1o3yA 166 8.06e+00 c.37.1.8 86618 1nf2A 268 8.60e+00 c.108.1.10 91849 2b9wA 424 8.97e+00 1vdhA 249 9.16e+00 d.58.4.10 108523 2g3mA 693 9.25e+00 1nh8A 304 9.86e+00 c.94.1.1,d.58.5.3 80507,80508 1lfpA 249 1.01e+01 e.39.1.1 73885 2cu1A 103 1.07e+01 d.15.2.2 130802 1so7A 382 1.08e+01 b.68.1.1 112106 1mp8A 281 1.09e+01 d.144.1.7 91384 2ijmA 281 1.11e+01 2dtjA 178 1.11e+01 2npoA 207 1.12e+01 2ppqA 322 1.15e+01 1uh6A 100 1.19e+01 d.15.1.1 99394 2i2cA 272 1.23e+01 1nvtA 287 1.26e+01 c.2.1.7,c.58.1.5 86270,86271 2ok3A 161 1.31e+01 2elcA 329 1.31e+01 2g30A 258 1.32e+01 b.1.10.1,d.105.1.1 134546,134547 1g60A 260 1.37e+01 c.66.1.11 70151 1y88A 199 1.39e+01 a.60.4.3,c.52.1.30 116560,116561 1y8cA 246 1.39e+01 c.66.1.43 116563 2p5mA 83 1.41e+01 2onfA 140 1.42e+01 1v7rA 186 1.49e+01 c.51.4.1 100482 2gagA 965 1.50e+01 2bkxA 242 1.51e+01 2dt9A 167 1.51e+01 1v9kA 228 1.53e+01 d.265.1.3 108449 1rz1A 161 1.54e+01 b.45.1.2 98124 2iksA 293 1.60e+01 1zpwX 90 1.64e+01 d.58.58.1 125478 1jeoA 180 1.64e+01 c.80.1.3 66611 1wvfA 520 1.69e+01 d.58.32.1,d.145.1.1 121337,121338 2ghpA 292 1.70e+01 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2nptB 100 1.73e+01 d.15.2.2 138449 2dejA 350 1.74e+01 2d59A 144 1.75e+01 c.2.1.8 131266 1rl6A 177 1.75e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1kzfA 230 1.76e+01 d.108.1.3 73354 1rsgA 516 1.82e+01 1ylxA 103 1.85e+01 d.82.5.1 123677 1ckiA 317 1.87e+01 1csn d.144.1.7 41660 1i2sA 282 1.88e+01 e.3.1.1 71104 1xpiA 231 1.88e+01 1zrzA 364 1.88e+01 1m1nA 491 1.89e+01 c.92.2.3 78417 3bwgA 239 1.93e+01 1wy7A 207 2.00e+01 c.66.1.32 121433 1aop 497 2.03e+01 2aop 1aopA 497 2.03e+01 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 2hivA 621 2.04e+01 1e42A 258 2.09e+01 1e42A b.1.10.1,d.105.1.1 22316,40792 2ej9A 237 2.12e+01 2p6hA 134 2.12e+01 1e3mA 800 2.15e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 2apqA 139 2.18e+01 1jpaA 312 2.19e+01 d.144.1.7 67011 3bioA 304 2.19e+01 1tvkA 440 2.20e+01 c.32.1.1,d.79.2.1 107362,107363 2cz9A 350 2.27e+01 2h6dA 276 2.29e+01 2otnA 308 2.33e+01 2gb3A 409 2.36e+01 c.67.1.1 134903 2eenA 183 2.56e+01 2fmpA 335 2.57e+01 a.60.6.1,a.60.12.1,d.218.1.2 133786,133787,133788 1u14A 172 2.59e+01 c.51.4.3 107579 1ne7A 289 2.60e+01 c.124.1.1 91833 1sqgA 429 2.60e+01 a.79.1.3,c.66.1.38 105912,105913 1bsgA 266 2.62e+01 e.3.1.1 42729 2fjlA 150 2.66e+01 b.55.1.1 133611 2ig8A 144 2.67e+01 1z9bA 135 2.68e+01 2iqhA 499 2.69e+01 2dc1A 236 2.69e+01 1xqaA 113 2.72e+01 d.32.1.2 115837 2furA 209 2.73e+01 b.45.1.1 134185 2i7rA 118 2.80e+01 d.32.1.2 137102 1u0kA 288 2.92e+01 d.21.1.2,d.21.1.2 107547,107548 1y8qA 346 2.92e+01 1vpkA 378 2.94e+01 d.131.1.1,d.131.1.1,d.131.1.1 113963,113964,113965 2pjmA 226 3.03e+01 2q8yA 241 3.05e+01 1vkpA 383 3.38e+01 d.126.1.6 108686 1ohtA 215 3.43e+01 d.118.1.1 87036 1gzsB 165 3.43e+01 a.168.1.1 76425 2b33A 140 3.46e+01 d.79.1.1 127765 1qh5A 260 3.52e+01 1qh5A d.157.1.2 42057 2c60A 111 3.57e+01 d.15.2.2 129966 2d42A 249 3.60e+01 1dptA 117 3.62e+01 1dptA d.80.1.3 39862 1kaeA 434 3.62e+01 c.82.1.2 72247 1khdA 345 3.62e+01 a.46.2.1,c.27.1.1 77400,77401 1k75A 434 3.63e+01 c.82.1.2 68253 1vfsA 386 3.69e+01 b.49.2.2,c.1.6.1 108584,108585 1u1iA 392 3.71e+01 c.2.1.3,d.81.1.3 107582,107583 1jw9B 249 3.72e+01 c.111.1.1 67377 2q3uA 383 3.76e+01 d.126.1.6 139809 2f6kA 307 3.77e+01 c.1.9.15 133047 1ss4A 153 3.79e+01 d.32.1.6 105976 2qhpA 296 3.79e+01 2e4uA 555 3.83e+01 2js7A 160 3.86e+01 2abqA 306 3.90e+01 c.72.1.1 126528 2bm0A 691 3.94e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 2yu1A 451 3.95e+01 1w2iA 91 3.97e+01 d.58.10.1 109127 1nv8A 284 4.00e+01 c.66.1.30 86224 1j27A 102 4.02e+01 d.58.50.1 90778 1x9mA 698 4.03e+01 c.55.3.5,e.8.1.1 114999,115000 1whzA 70 4.07e+01 d.50.3.2 114656 1xttA 216 4.13e+01 c.61.1.1 122300 3cbuA 214 4.14e+01 1wlsA 328 4.19e+01 2z8pA 241 4.31e+01 2jsxA 95 4.33e+01 1u7iA 136 4.44e+01 d.32.1.7 107724 2atzA 180 4.45e+01 d.264.1.3 127317 1zwyA 185 4.52e+01 c.51.4.3 125753 2a5dA 175 4.55e+01 c.37.1.8 126172 2j7tA 302 4.58e+01 2f2uA 402 4.63e+01 1jbeA 128 4.76e+01 3chy c.23.1.1 62845 2j9lA 185 4.79e+01 1nrzA 164 4.80e+01 c.38.1.1 86131 2anrA 178 4.82e+01 1xxlA 239 4.88e+01 c.66.1.41 116203 1l0wA 580 4.94e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1wn2A 121 5.03e+01 2ifxA 114 5.06e+01 2yqzA 263 5.07e+01 1v2xA 194 5.10e+01 c.116.1.1 100274 2pebA 122 5.16e+01 1hh1A 143 5.17e+01 1gefA c.52.1.18 61036 2ri0A 234 5.18e+01 1wyuA 438 5.22e+01 c.67.1.7 121452 3bgvA 313 5.25e+01 2ivyA 101 5.30e+01 1vhiA 142 5.35e+01 1b3tA d.58.8.1 39230 1q74A 303 5.37e+01 c.134.1.1 96019 1hbnC 248 5.39e+01 1mroC d.58.31.1 60902 2hnhA 910 5.43e+01 1fxxA 482 5.48e+01 1fxxA c.55.3.5 33726 1n0uA 842 5.48e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 3bqcA 335 5.51e+01 2ys1A 113 5.52e+01 1bx1A 314 5.57e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1v5pA 126 5.58e+01 b.55.1.1 108382 1xgkA 352 5.61e+01 c.2.1.2 115286 2a2cA 478 5.69e+01 2e1nA 138 5.70e+01 1ry9A 145 5.70e+01 d.198.1.1 98094 2pvrA 334 5.74e+01 3chy 128 5.82e+01 3chy 1fs5A 266 5.85e+01 c.124.1.1 65044 1ri7A 171 5.90e+01 a.4.5.32,d.58.4.2 97504,97505 1d8hA 311 5.92e+01 1d8iA d.63.1.1 39544 1wdiA 345 5.97e+01 e.53.1.1 114535 1sc6A 404 6.00e+01 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2gviA 204 6.06e+01 1mroC 247 6.08e+01 1mroC d.58.31.1 39437 1iow 306 6.08e+01 1iow 1iowA 306 6.08e+01 c.30.1.2,d.142.1.1 31713,41481 2a2nA 176 6.09e+01 b.62.1.1 126041 2cyyA 151 6.12e+01 a.4.5.32,d.58.4.2 131028,131029 2anyA 241 6.16e+01 1ukuA 102 6.17e+01 d.58.5.2 99533 1zysA 273 6.29e+01 1uyrA 737 6.29e+01 c.14.1.4,c.14.1.4 100188,100189 2dy1A 665 6.29e+01 1vi9A 299 6.30e+01 c.72.1.5 100750 2gukA 120 6.35e+01 1wvqA 167 6.36e+01 3c5oA 157 6.36e+01 1vdwA 254 6.38e+01 e.7.1.1 100569 2gfgA 193 6.47e+01 1dar 691 6.52e+01 1dar 1r94A 118 6.54e+01 b.124.1.1 97251 1uwkA 557 6.56e+01 e.51.1.1 108065 1j3mA 129 6.59e+01 d.129.7.1 103836 1jp4A 308 6.65e+01 1jp4A e.7.1.1 63223 2oc6A 124 6.66e+01 1f75A 249 6.66e+01 1f75A c.101.1.1 59662 2f1rA 171 6.66e+01 1k6xA 352 6.66e+01 c.2.1.2 68238 1zj8A 566 6.75e+01 2zfdA 226 6.76e+01 2hk9A 275 6.77e+01 3c3pA 210 6.78e+01 1b5qA 472 6.79e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 2raqA 97 6.80e+01 1n2fA 142 6.83e+01 d.227.1.1 79853 4blmA 265 6.86e+01 1btl e.3.1.1 42721 1bg6 359 6.88e+01 1bg6 1bg6A 359 6.88e+01 a.100.1.5,c.2.1.6 18810,30214 1zvkA 358 6.95e+01 1npyA 271 6.95e+01 c.2.1.7,c.58.1.5 85995,85996 1wwlA 312 7.09e+01 2pqcA 445 7.10e+01 1ou8A 111 7.10e+01 b.136.1.1 93543 1heiA 451 7.13e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 2gg6A 455 7.14e+01 2ckfB 174 7.21e+01 2bw0A 329 7.26e+01 b.46.1.1,c.65.1.1 129303,129304 2ouxA 286 7.27e+01 1dp4A 435 7.32e+01 1dp4A c.93.1.1 35710 2r6vA 191 7.35e+01 3bpuA 88 7.37e+01 1psdA 409 7.41e+01 1psdA c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2rkpA 335 7.45e+01 2qy6A 257 7.48e+01 1vqoH 171 7.50e+01 d.41.4.1 120369 1btkA 169 7.52e+01 1btkA b.55.1.1 26959 1vfgA 390 7.64e+01 a.173.1.1,d.218.1.4 108570,108571 1fndA 314 7.78e+01 b.43.4.2,c.25.1.1 25626,31516 1wakA 397 7.84e+01 1ygyA 529 7.85e+01 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153