# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2j9cA 119 2.37e-20 2pii 112 4.07e-20 2pii 2eg2A 112 1.72e-18 2ns1B 116 2.31e-18 2gw8A 114 1.64e-17 1vfjA 116 4.73e-17 d.58.5.1 113637 3bzqA 114 1.57e-16 1gnkA 112 1.05e-15 2pii d.58.5.1 39073 2o66A 135 4.26e-15 1o51A 114 6.82e-02 d.58.5.4 92480 2dtjA 178 1.20e-01 2dclA 127 1.37e-01 1ur3M 319 1.34e+00 c.1.7.1 99806 1hurA 180 1.58e+00 1hurA c.37.1.8 32052 1jg1A 235 1.64e+00 c.66.1.7 66661 2eklA 313 2.00e+00 1xwiA 322 2.27e+00 2rgyA 290 2.82e+00 1o3yA 166 2.83e+00 c.37.1.8 86618 2bg5A 324 2.95e+00 1r8sA 164 3.13e+00 c.37.1.8 97247 1sqgA 429 3.68e+00 a.79.1.3,c.66.1.38 105912,105913 2b6hA 192 3.89e+00 c.37.1.8 127994 2otnA 308 4.97e+00 1pud 386 5.15e+00 1pud 2px0A 296 5.56e+00 2dt9A 167 5.74e+00 2ok3A 161 5.83e+00 1o20A 427 6.37e+00 c.82.1.1 86556 2chgA 226 7.14e+00 1wyuA 438 7.29e+00 c.67.1.7 121452 1pxgA 382 7.37e+00 c.1.20.1 95287 2g3mA 693 8.12e+00 1r5yA 386 8.13e+00 c.1.20.1 97134 2bl5A 140 8.55e+00 d.51.1.1 128728 3b9pA 297 1.01e+01 2dt5A 211 1.17e+01 a.4.5.38,c.2.1.12 131708,131709 3c1mA 473 1.35e+01 2ha8A 184 1.37e+01 1y14A 187 1.44e+01 a.60.8.2 116322 1xcbA 211 1.48e+01 a.4.5.38,c.2.1.12 109552,109553 2qahA 303 1.54e+01 1u1iA 392 1.56e+01 c.2.1.3,d.81.1.3 107582,107583 1jeoA 180 1.65e+01 c.80.1.3 66611 2o7oA 207 1.67e+01 a.4.1.9,a.121.1.1 138930,138931 1g41A 444 1.93e+01 1do0A c.37.1.20 32450 2erfA 209 1.94e+01 b.29.1.4 132287 2qzjA 136 1.99e+01 2ggoA 401 2.01e+01 2jsxA 95 2.02e+01 1w1oA 534 2.08e+01 d.58.32.4,d.145.1.1 109071,109072 2pjmA 226 2.15e+01 1vm7A 311 2.19e+01 c.72.1.1 108884 1no5A 114 2.25e+01 d.218.1.5 92014 2r6r1 338 2.26e+01 2i82A 217 2.38e+01 2cw6A 298 2.38e+01 1n9eA 787 2.44e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1nf2A 268 2.48e+01 c.108.1.10 91849 1yz7A 188 2.50e+01 3brbA 313 2.61e+01 2f46A 156 2.63e+01 2npoA 207 2.63e+01 1q9uA 130 2.69e+01 d.129.7.1 96314 2tct 207 2.71e+01 2tct 2j0wA 449 2.73e+01 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 2eq6A 464 2.74e+01 1mr3F 181 2.75e+01 c.37.1.8 79422 2qyxA 238 2.77e+01 1f0jA 377 2.87e+01 1f0jA a.211.1.2 19346 1srvA 145 2.88e+01 1derA c.8.5.1 30817 1oo0A 147 2.94e+01 d.232.1.1 87182 1fdr 248 2.98e+01 1fdr 1fdrA 248 2.98e+01 b.43.4.2,c.25.1.1 25653,31543 1u7iA 136 3.00e+01 d.32.1.7 107724 3c2eA 294 3.07e+01 2gnxA 365 3.08e+01 2dh2A 424 3.14e+01 1gytA 503 3.20e+01 c.50.1.1,c.56.5.3 70765,70766 1i6aA 219 3.21e+01 c.94.1.1 61827 1a6m 151 3.22e+01 1a6m 1a6mA 151 3.22e+01 a.1.1.2 15018 1t0bA 252 3.23e+01 c.23.16.6 106199 1tmyA 120 3.35e+01 c.23.1.1 31083 1ln4A 104 3.37e+01 d.68.4.1 74043 2qulA 290 3.38e+01 2fiaA 162 3.42e+01 d.108.1.1 133514 2hqbA 296 3.45e+01 1em8A 147 3.46e+01 c.128.1.1 90457 2aefA 234 3.47e+01 1jmkC 230 3.53e+01 c.69.1.22 71747 1qyiA 384 3.55e+01 c.108.1.13 96595 2abqA 306 3.58e+01 c.72.1.1 126528 1mxgA 435 3.62e+01 b.71.1.1,c.1.8.1 85193,85194 1whzA 70 3.69e+01 d.50.3.2 114656 2bd0A 244 3.77e+01 c.2.1.2 128321 1pea 385 3.85e+01 1pea 1peaA 385 3.85e+01 c.93.1.1 35662 1qxoA 388 3.91e+01 d.258.1.1 96539 2pebA 122 3.97e+01 2grmA 317 4.01e+01 1u0sY 118 4.04e+01 c.23.1.1 107566 1eny 268 4.04e+01 1eny 1hruA 188 4.30e+01 1hruA d.115.1.1 40926 1tvmA 113 4.52e+01 2nwuA 155 4.54e+01 2ogeA 399 4.54e+01 1kgdA 180 4.57e+01 c.37.1.1 68582 2au5A 139 4.59e+01 a.244.1.1 127322 1y8cA 246 4.61e+01 c.66.1.43 116563 2h7mA 269 4.65e+01 c.2.1.2 136219 2zihA 347 4.66e+01 2b99A 156 4.66e+01 1fp2A 352 4.78e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1um0A 365 4.82e+01 d.258.1.1 107942 2hstA 143 4.84e+01 1r8sE 203 4.93e+01 a.118.3.1 97248 2h57A 190 4.95e+01 2bshA 125 4.95e+01 1vpqA 273 5.10e+01 c.1.32.1 113974 2gwgA 350 5.22e+01 c.1.9.15 135805 1zsyA 357 5.26e+01 2fm8A 135 5.46e+01 d.198.1.1 133767 1dar 691 5.47e+01 1dar 3xis 387 5.49e+01 4xis 1zxzA 197 5.59e+01 2d0oA 610 5.60e+01 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 2cdqA 510 5.61e+01 c.73.1.3,d.58.18.10,d.58.18.10 130290,130291,130292 2js7A 160 5.62e+01 4xis 387 5.76e+01 4xis 2h5xA 196 5.79e+01 1f75A 249 5.80e+01 1f75A c.101.1.1 59662 1muwA 386 5.83e+01 c.1.15.3 79495 1in0A 163 5.86e+01 d.58.49.1,d.58.49.1 83694,83695 1v5pA 126 5.89e+01 b.55.1.1 108382 2p5mA 83 5.92e+01 2zc3C 125 6.00e+01 2j82A 240 6.03e+01 1dy5A 124 6.06e+01 7rsa d.5.1.1 37163 2iw0A 254 6.07e+01 c.6.2.3 137737 1jp4A 308 6.08e+01 1jp4A e.7.1.1 63223 2apqA 139 6.10e+01 1xdwA 331 6.14e+01 1x1nA 524 6.23e+01 c.1.8.1 121593 2irpA 208 6.35e+01 2ijeS 240 6.36e+01 2ccjA 205 6.52e+01 1r8mE 203 6.56e+01 a.118.3.1 97242 1gp1A 198 6.61e+01 1gp1A c.47.1.10 33059 1zclA 180 6.64e+01 2ow6A 1045 6.65e+01 2hbaA 52 6.76e+01 1d3cA 686 6.80e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2raqA 97 6.81e+01 1tf5A 844 6.83e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1jyeA 349 6.86e+01 c.93.1.1 67455 2cb9A 244 6.93e+01 1xg5A 279 6.96e+01 c.2.1.2 115277 2anuA 255 7.02e+01 c.6.3.1 127058 2furA 209 7.05e+01 b.45.1.1 134185 1qwnA 1045 7.07e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2z2mC 125 7.07e+01 1konA 249 7.18e+01 e.39.1.1 72823 1cx4A 305 7.21e+01 b.82.3.2,b.82.3.2 59099,59100 1i7qA 519 7.22e+01 1qdlA d.161.1.1 61901 2f7lA 455 7.23e+01 1ctf 74 7.23e+01 1ctf 1ctfA 74 7.23e+01 d.45.1.1 38759 1elvA 333 7.26e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 2hcyA 347 7.26e+01 1fmcA 255 7.30e+01 1cydA c.2.1.2 29856 2atzA 180 7.34e+01 d.264.1.3 127317 2pbxA 203 7.39e+01 3c7jA 237 7.44e+01 2asbA 251 7.50e+01 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 1htyA 1015 7.70e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1lopA 164 7.79e+01 2cpl b.62.1.1 27510 2bhoA 130 7.80e+01 1w2iA 91 7.83e+01 d.58.10.1 109127 1lfpA 249 7.87e+01 e.39.1.1 73885 2dm6A 333 7.90e+01 b.35.1.2,c.2.1.1 131567,131568