# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vfjA 117 1.945e-02 d.58.5.1 113637 2o66A 108 3.757e-02 2j9cA 118 4.322e-02 3bzqA 100 7.269e-02 2eg2A 96 8.325e-02 1gnkA 99 1.219e-01 2pii d.58.5.1 39073 2gw8A 100 1.245e-01 2ns1B 114 2.372e-01 2pii 113 7.739e-01 2pii 2nocA 100 1.711e+00 1o50A 142 1.874e+00 d.37.1.1 92478 d.37.1.1 92479 2nycA 131 2.698e+00 d.37.1.1 138812 1q7lB 89 3.680e+00 1wjuA 101 4.047e+00 d.15.1.1 114712 1pvmA 179 4.221e+00 d.37.1.1 95171 d.37.1.1 95172 g.41.13.1 95173 2yziA 133 5.005e+00 2p9mA 129 5.314e+00 1ep3A 312 5.418e+00 2dorA c.1.4.1 28597 2uv4A 144 6.569e+00 1y5hA 124 6.832e+00 d.37.1.1 122635 d.37.1.1 122636 1bvwA 361 7.687e+00 1bvwA c.6.1.1 30668 1oc7A 365 7.709e+00 c.6.1.1 86794 2bvwA 362 7.820e+00 1bvwA c.6.1.1 30666 2j9lA 168 9.274e+00 1d3gA 361 1.016e+01 1d3gA c.1.4.1 28600 1yxyA 231 1.140e+01 c.1.2.5 124203 2o16A 133 1.150e+01 d.37.1.1 138869 d.37.1.1 138870 1e4eA 342 1.204e+01 1iow c.30.1.2 59221 d.142.1.1 59222 2dorA 312 1.252e+01 2dorA c.1.4.1 28593 2rc3A 128 1.320e+01 2ef7A 128 1.402e+01 1pbjA 121 1.471e+01 d.37.1.1 94414 d.37.1.1 94415 2fv2A 268 1.508e+01 1xkfA 121 1.523e+01 d.37.1.1 122077 d.37.1.1 122078 2yzqA 225 1.607e+01 1pm1X 181 1.712e+01 b.60.1.1 104189 2axtL 38 1.751e+01 1np1A 185 1.754e+01 1np1A b.60.1.1 27155 1vr9A 122 1.770e+01 d.37.1.1 120446 d.37.1.1 120447 2hgoA 28 1.775e+01 2yvyA 249 1.778e+01 2bo9B 218 1.846e+01 d.17.1.5 128898 d.17.1.5 128899 1m36A 34 1.849e+01 g.37.1.2 91172 2i87A 346 1.899e+01 2o3lA 83 1.912e+01 2pfiA 146 2.209e+01 1dysA 346 2.258e+01 1bvwA c.6.1.1 30669 1eryA 40 2.258e+01 a.10.1.1 16364 2akaB 300 2.299e+01 c.37.1.8 126914 3cnyA 301 2.442e+01 1dj7A 110 2.466e+01 1dj7A g.36.1.1 44997 1rqbA 473 2.619e+01 a.5.7.2 105057 c.1.10.5 105058 1ypfA 296 2.640e+01 1wnhA 221 2.674e+01 1uumA 351 2.946e+01 c.1.4.1 100010 2nv1A 260 3.005e+01 1ki9A 192 3.085e+01 c.37.1.1 84404 1c02A 167 3.088e+01 1qspA a.24.10.2 16633 1jubA 312 3.103e+01 c.1.4.1 90908 2pqfA 186 3.179e+01 1b6sA 352 3.333e+01 1b6rA b.84.2.1 28242 c.30.1.1 31649 d.142.1.2 41494 2e79A 109 3.435e+01 2k1vA 22 3.477e+01 1zj8A 547 3.541e+01 1o51A 90 3.586e+01 d.58.5.4 92480 1fjgJ 99 3.608e+01 1fjfJ d.58.15.1 39330 1m1eB 66 3.639e+01 a.161.1.1 78400 1nwdB 29 3.685e+01 2b3yA 889 3.766e+01 c.8.2.1 127803 c.83.1.1 127804 1dorA 312 3.970e+01 2dorA c.1.4.1 28595