a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0404
- gi|119484702|ref|ZP_01619184.1|_3:110 hypothetical protein L8106_14555 [Lyngbya sp. PCC 8106]
- gi|119457520|gb|EAW38644.1| hypothetical protein L8106_14555 [Lyngbya sp. PCC 8106]
- gi|17229625|ref|NP_486173.1|_3:110 hypothetical protein all2133 [Nostoc sp. PCC 7120]
- gi|17131224|dbj|BAB73832.1| all2133 [Nostoc sp. PCC 7120]
- gi|158337288|ref|YP_001518463.1|_3:110 hypothetical protein AM1_4165 [Acaryochloris marina MBIC11017]
- gi|158307529|gb|ABW29146.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
- gi|166368951|ref|YP_001661224.1|_3:110 hypothetical protein MAE_62100 [Microcystis aeruginosa NIES-843]
- gi|166091324|dbj|BAG06032.1| hypothetical protein [Microcystis aeruginosa NIES-843]
- gi|75909237|ref|YP_323533.1|_4:110 plasma membrane protein of unknown function [Anabaena variabilis ATCC 29413]
- gi|75702962|gb|ABA22638.1| plasma membrane protein of unknown function [Anabaena variabilis ATCC 29413]
- gi|56752471|ref|YP_173172.1|_2:104 hypothetical protein syc2462_d [Synechococcus elongatus PCC 6301]
- gi|81300285|ref|YP_400493.1| hypothetical protein Synpcc7942_1476 [Synechococcus elongatus PCC 7942]
- gi|56687430|dbj|BAD80652.1| hypothetical protein [Synechococcus elongatus PCC 6301]
- gi|81169166|gb|ABB57506.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
- gi|170077098|ref|YP_001733736.1|_2:104 conserved hypothetical protein [Synechococcus sp. PCC 7002]
- gi|169884767|gb|ACA98480.1| conserved hypothetical protein [Synechococcus sp. PCC 7002]
- gi|16330613|ref|NP_441341.1|_3:110 hypothetical protein slr1513 [Synechocystis sp. PCC 6803]
- gi|1653105|dbj|BAA18021.1| slr1513 [Synechocystis sp. PCC 6803]
- gi|172037850|ref|YP_001804351.1|_2:96 unknown [Cyanothece sp. ATCC 51142]
- gi|171699304|gb|ACB52285.1| unknown [Cyanothece sp. ATCC 51142]
- gi|126657931|ref|ZP_01729084.1|_2:96 hypothetical protein CY0110_13741 [Cyanothece sp. CCY0110]
- gi|126620871|gb|EAZ91587.1| hypothetical protein CY0110_13741 [Cyanothece sp. CCY0110]
- gi|146309490|ref|YP_001189955.1|_4:100 hypothetical protein Pmen_4476 [Pseudomonas mendocina ymp]
- gi|145577691|gb|ABP87223.1| hypothetical protein Pmen_4476 [Pseudomonas mendocina ymp]
- gi|186903618|ref|ZP_02976550.1|_2:96 conserved hypothetical protein [Cyanothece sp. PCC 7424]
- gi|186689349|gb|EDU13993.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
- gi|46198448|ref|YP_004115.1|_3:99 hypothetical protein TTC0140 [Thermus thermophilus HB27]
- gi|46196070|gb|AAS80488.1| hypothetical conserved protein [Thermus thermophilus HB27]
- gi|55980485|ref|YP_143782.1|_3:99 hypothetical protein TTHA0516 [Thermus thermophilus HB8]
- gi|55771898|dbj|BAD70339.1| conserved hypothetical protein [Thermus thermophilus HB8]
- gi|88192703|pdb|2CZ4|A_22:118 Chain A, Crystal Structure Of A Putative Pii-Like Signaling Protein (Ttha0516) From Thermus Thermophilus Hb8 [Taxonomy]
- gi|88192704|pdb|2CZ4|B Chain B, Crystal Structure Of A Putative Pii-Like Signaling Protein (Ttha0516) From Thermus Thermophilus Hb8 [Taxonomy]
- gi|88192705|pdb|2CZ4|C Chain C, Crystal Structure Of A Putative Pii-Like Signaling Protein (Ttha0516) From Thermus Thermophilus Hb8 [Taxonomy]
- gi|67925290|ref|ZP_00518649.1|_2:96 hypothetical protein CwatDRAFT_0883 [Crocosphaera watsonii WH 8501]
- gi|67852859|gb|EAM48259.1| hypothetical protein CwatDRAFT_0883 [Crocosphaera watsonii WH 8501]
- gi|148657948|ref|YP_001278153.1|_4:99 nitrogen regulatory protein P-II [Roseiflexus sp. RS-1]
- gi|148570058|gb|ABQ92203.1| nitrogen regulatory protein P-II [Roseiflexus sp. RS-1]
- gi|146280585|ref|YP_001170738.1|_4:100 hypothetical protein PST_0189 [Pseudomonas stutzeri A1501]
- gi|145568790|gb|ABP77896.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
- gi|156740589|ref|YP_001430718.1|_4:99 nitrogen regulatory protein P-II [Roseiflexus castenholzii DSM 13941]
- gi|156231917|gb|ABU56700.1| nitrogen regulatory protein P-II [Roseiflexus castenholzii DSM 13941]
- gi|119897771|ref|YP_932984.1|_3:101 probable nitrogen regulatory protein P-II [Azoarcus sp. BH72]
- gi|119670184|emb|CAL94097.1| probable nitrogen regulatory protein P-II [Azoarcus sp. BH72]
- gi|118046884|ref|ZP_01515529.1|_4:101 conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
- gi|117996613|gb|EAV10809.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
- gi|163783117|ref|ZP_02178112.1|_6:106 hypothetical protein HG1285_01040 [Hydrogenivirga sp. 128-5-R1-1]
- gi|159881797|gb|EDP75306.1| hypothetical protein HG1285_01040 [Hydrogenivirga sp. 128-5-R1-1]
- gi|88856556|ref|ZP_01131213.1|_4:100 hypothetical protein A20C1_02384 [marine actinobacterium PHSC20C1]
- gi|88814210|gb|EAR24075.1| hypothetical protein A20C1_02384 [marine actinobacterium PHSC20C1]
- gi|163847347|ref|YP_001635391.1|_4:104 nitrogen regulatory protein P-II [Chloroflexus aurantiacus J-10-fl]
- gi|187601652|ref|ZP_02987880.1| nitrogen regulatory protein P-II [Chloroflexus sp. Y-400-fl]
- gi|163668636|gb|ABY35002.1| nitrogen regulatory protein P-II [Chloroflexus aurantiacus J-10-fl]
- gi|187486330|gb|EDU24303.1| nitrogen regulatory protein P-II [Chloroflexus sp. Y-400-fl]
- gi|92109465|ref|YP_571753.1|_6:106 nitrogen regulatory protein P-II (GlnB, GlnK) [Nitrobacter hamburgensis X14]
- gi|92109469|ref|YP_571757.1| nitrogen regulatory protein P-II (GlnB, GlnK) [Nitrobacter hamburgensis X14]
- gi|91802547|gb|ABE64921.1| nitrogen regulatory protein P-II (GlnB, GlnK) [Nitrobacter hamburgensis X14]
- gi|91802551|gb|ABE64925.1| nitrogen regulatory protein P-II (GlnB, GlnK) [Nitrobacter hamburgensis X14]
- gi|15606209|ref|NP_213586.1|_6:106 hypothetical protein aq_862 [Aquifex aeolicus VF5]
- gi|2983409|gb|AAC06993.1| putative protein [Aquifex aeolicus VF5]
- gi|74318670|ref|YP_316410.1|_6:106 Nitrogen regulatory protein P-II (GlnB, GlnK) [Thiobacillus denitrificans ATCC 25259]
- gi|74058165|gb|AAZ98605.1| Nitrogen regulatory protein P-II (GlnB, GlnK) [Thiobacillus denitrificans ATCC 25259]
- gi|88810444|ref|ZP_01125701.1|_6:106 Nitrogen regulatory protein P-II (GlnB, GlnK) [Nitrococcus mobilis Nb-231]
- gi|88792074|gb|EAR23184.1| Nitrogen regulatory protein P-II (GlnB, GlnK) [Nitrococcus mobilis Nb-231]
- gi|87302047|ref|ZP_01084881.1|_2:96 hypothetical protein WH5701_01940 [Synechococcus sp. WH 5701]
- gi|87283615|gb|EAQ75570.1| hypothetical protein WH5701_01940 [Synechococcus sp. WH 5701]
- gi|145297185|ref|YP_001140026.1|_4:100 hypothetical protein ASA_0073 [Aeromonas salmonicida subsp. salmonicida A449]
- gi|142849957|gb|ABO88278.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449]
- gi|157273501|gb|ABV27400.1|_3:99 conserved hypothetical protein [Candidatus Chloracidobacterium thermophilum]
- gi|117618928|ref|YP_854597.1|_5:100 hypothetical protein AHA_0071 [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
- gi|117560335|gb|ABK37283.1| conserved hypothetical protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
- gi|119510029|ref|ZP_01629170.1|_2:103 hypothetical protein N9414_20315 [Nodularia spumigena CCY9414]
- gi|119465353|gb|EAW46249.1| hypothetical protein N9414_20315 [Nodularia spumigena CCY9414]
- gi|167777780|gb|ABZ96080.1|_5:101 Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
- gi|167781507|gb|ABZ99804.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)']
- gi|149177509|ref|ZP_01856112.1|_5:101 hypothetical protein PM8797T_15516 [Planctomyces maris DSM 8797]
- gi|148843659|gb|EDL58019.1| hypothetical protein PM8797T_15516 [Planctomyces maris DSM 8797]
- gi|172037623|ref|YP_001804124.1|_7:98 unknown [Cyanothece sp. ATCC 51142]
- gi|171699077|gb|ACB52058.1| unknown [Cyanothece sp. ATCC 51142]
- gi|126654874|ref|ZP_01726408.1|_6:97 hypothetical protein CY0110_10572 [Cyanothece sp. CCY0110]
- gi|126623609|gb|EAZ94313.1| hypothetical protein CY0110_10572 [Cyanothece sp. CCY0110]
- gi|186903966|ref|ZP_02976889.1|_6:96 conserved hypothetical protein [Cyanothece sp. PCC 7424]
- gi|186688979|gb|EDU13632.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
- gi|158339704|ref|YP_001520711.1|_7:97 hypothetical protein AM1_A0052 [Acaryochloris marina MBIC11017]
- gi|158309945|gb|ABW31561.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
- gi|83945435|ref|ZP_00957783.1|_6:102 hypothetical protein OA2633_14651 [Oceanicaulis alexandrii HTCC2633]
- gi|83851269|gb|EAP89126.1| hypothetical protein OA2633_14651 [Oceanicaulis alexandrii HTCC2633]
- gi|84515788|ref|ZP_01003149.1|_3:102 Nitrogen regulatory protein P-II [Loktanella vestfoldensis SKA53]
- gi|84510230|gb|EAQ06686.1| Nitrogen regulatory protein P-II [Loktanella vestfoldensis SKA53]
- gi|163761630|ref|ZP_02168700.1|_6:105 nitrogen regulatory protein P-II (GlnB, GlnK) [Hoeflea phototrophica DFL-43]
- gi|162281124|gb|EDQ31425.1| nitrogen regulatory protein P-II (GlnB, GlnK) [Hoeflea phototrophica DFL-43]
- gi|89052601|ref|YP_508052.1|_3:103 hypothetical protein Jann_0110 [Jannaschia sp. CCS1]
- gi|88862150|gb|ABD53027.1| nitrogen regulatory protein P-II [Jannaschia sp. CCS1]
- gi|85708686|ref|ZP_01039752.1|_4:102 Nitrogen regulatory protein P-II (GlnB, GlnK) [Erythrobacter sp. NAP1]
- gi|85690220|gb|EAQ30223.1| Nitrogen regulatory protein P-II (GlnB, GlnK) [Erythrobacter sp. NAP1]
- gi|161527994|ref|YP_001581820.1|_3:100 hypothetical protein Nmar_0486 [Nitrosopumilus maritimus SCM1]
- gi|160339295|gb|ABX12382.1| conserved hypothetical protein [Nitrosopumilus maritimus SCM1]
- gi|86750939|ref|YP_487435.1|_3:103 nitrogen regulatory protein P-II (GlnB, GlnK) [Rhodopseudomonas palustris HaA2]
- gi|86573967|gb|ABD08524.1| nitrogen regulatory protein P-II (GlnB, GlnK) [Rhodopseudomonas palustris HaA2]
- gi|144897724|emb|CAM74588.1|_7:95 conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1]
- gi|166365692|ref|YP_001657965.1|_9:101 hypothetical protein MAE_29510 [Microcystis aeruginosa NIES-843]
- gi|166088065|dbj|BAG02773.1| hypothetical protein [Microcystis aeruginosa NIES-843]
- gi|124006340|ref|ZP_01691174.1|_3:98 nitrogen regulatory protein P-II, putative [Microscilla marina ATCC 23134]
- gi|123987997|gb|EAY27668.1| nitrogen regulatory protein P-II, putative [Microscilla marina ATCC 23134]
- gi|114797735|ref|YP_760239.1|_6:101 hypothetical protein HNE_1528 [Hyphomonas neptunium ATCC 15444]
- gi|114737909|gb|ABI76034.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
- gi|75908383|ref|YP_322679.1|_5:91 Nitrogen regulatory protein P-II (GlnB, GlnK) [Anabaena variabilis ATCC 29413]
- gi|75702108|gb|ABA21784.1| Nitrogen regulatory protein P-II (GlnB, GlnK) [Anabaena variabilis ATCC 29413]
- gi|87302152|ref|ZP_01084977.1|_4:89 hypothetical protein WH5701_08124 [Synechococcus sp. WH 5701]
- gi|87283077|gb|EAQ75033.1| hypothetical protein WH5701_08124 [Synechococcus sp. WH 5701]
- gi|33863481|ref|NP_895041.1|_2:88 hypothetical protein PMT1212 [Prochlorococcus marinus str. MIT 9313]
- gi|33640930|emb|CAE21387.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313]
- gi|124022507|ref|YP_001016814.1|_2:88 hypothetical protein P9303_07981 [Prochlorococcus marinus str. MIT 9303]
- gi|123962793|gb|ABM77549.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9303]

              10        20        30          40        50        60   
              |         |         |           |         |         |   
   1 MSKRANKLVIVTEKVLLKKVAKIIEEAGATGYTVV.D.TGGKGSRNVRSTGKPNTSDTDSNVKFE
   2 --KPAKKLVIITEKLLLKKIAKIIDEAGATGYTVL.E.TGGKGSRNMRSSGQPSVSDTTSNIKFE
   3 --KPAKKLVIVTEKILLKKIANIIEESGATGYTVL.E.TGGKGSRNVRSTGQPNVSDTQANIKFE
   4 --KPAKKLVIVTEKLLLKKIAQIIDEAGATGYTVV.D.AGGKGSRNVRSSGQPSVSDTFSNIKIE
   5 --KPAKKLVIVTEKILLKKVAKIIEECGASGYTVM.D.TGGKGSRNVRSSGQPHVSETDSNVKFE
   6 ---RANKLVIVTEKVLLKKVAKIIEEAGATGYTVV.D.TGGKGSRNVRSTGKPNTSDTDSNVKFE
   7 -TQKACKLIIVTEKVLQNKITQIIDAAGATGYTVV.S.AGGRGSRNVRSSGQPNVSDTYSNIKIE
   8 -TQQAIKLVIVTEKLLLKKIAKIIDGVGATGYTVV.P.AGGKGSRNVRSSGQPNVSDTSSNVKIE
   9 --KPANKLVIVTEKILLKKIAKIIDESGAKGYTVM.N.TGGKGSRNVRSSGQPNTSDIEANIKFE
  10 -TQKASKLVIVTEKVLLKKVAKIIDKAGATGYTVV.A.AGGKGSRGVRSSGQPSVNDTFTNVKFE
  11 -TQKASKLVIVTEKVLLKKVAKIIDKAGATGYTVV.A.AGGKGSRGVRSSGQPTVGDAFSNVKFE
  12 --HNRTLLTVICEAALEKRLLADLETLGAPGWTIS.D.ARGRGHRGVRSAGWDTEGNIRLEI---
  13 -TQKASKLVIVTEKVLLKKVAKIIDEAGATGYTVV.A.AGGKGSRGVRSSGQPTVGDTFSNVKFE
  14 -LVPLKLVTIVAESLLEKRLVEEVKRLGAKGYTIT.P.ARGEGSRGIRSVDWEGQNIRLE-----
  15 -LVPLKLVTIVAESLLEKRLVEEVKRLGAKGYTIT.P.ARGEGSRGIRSVDWEGQNIRLE-----
  16 -LVPLKLVTIVAESLLEKRLVEEVKRLGAKGYTIT.P.ARGEGSRGIRSVDWEGQNIRLE-----
  17 -TQKACKLVIVTEKLLLKKIGKIIDEAGATGYTVV.A.AGGKGSRGVRSSGQPIVGDTFSNVKFE
  18 --TTVRLVTIIAEPVLKDRLIHEIHALGAHGYTIS.E.VHGEGTRGIHASQWQGGNIKIE-----
  19 --HNRTLLTVICEAALEHKLEADLKTLGAPGWTLS.D.ARGSGSRGVRSAGWETDGNIRLEV---
  20 --TTVRLVTIIAEPVLKDRLIHEIHALGAHGYTIS.E.VHGEGTRGIHASQWQGGNIKIE-----
  21 NTHPCKLVVIIAEEALEGPLAKDVMALGAHGYTVS.D.VRGCGSHGMRSGVWDADSSIRME----
  22 --TTVKLVTIISEAILEERILHDLRKLGARGYTVG.E.VRGEGTRGVHASEWEGKSLRIE-----
  23 -LYTMKKVEVIIEGEYLEFVTELLERAGVPGYTIVhN.LSGKGSHGFHEGHLLFNEEE---VLVM
  24 --HTRKLLTVITEAALESTLVRDLDRLNAHGYTIT.D.ARGKGSRGVRDAGWEANSNIRIEI---
  25 --TTVKLVTIIAEAVLEDRLLHDLRHLGARGYTVG.T.VRGEGTRGIHASEWEGKSLRIE-----
  26 -LHPLKKLEFILEGAHKEFVTDLLDRAGVKGYTIVgN.LSGKGSHGLYGGHLMFNEDD---VLIM
  27 -LYQMKKVEIIVRGEDLDFVLDLLEKAGVKGYTIIhN.LSGKGSHGFHEGHLLFNEEDV---LDM
  28 -LSPLKKIEIILEGAHQEFATDLLDRAGVTGYTIVgN.LSGKGRHGFHEGHLMFNEDA---VLIM
  29 -LSPLKKLEIIVGGEHQEFATDILDRAGVKGYTIInN.LSGKGRHGFHEGHLMFNEDD---VLIM
  30 ---------IVGEEILSKKLIKLIKAAGATGYTVN.A.AGGEGSRNVRSTGDPVVSHTLSNVKIE
  31 --ETRTLLTVITEANLEPTLLRTLTREGLRGYTIT.D.ARGRGDHGERNASWSESGNIRLEA---
  32 -TFEMKLVVIITEDELEPRLTKEIMALGARGYTVS.R.VQGEGWHGARKSEWEGENVRIE-----
  33 ---IRTLLTVITEANLEPTLLRTLTREGLRGYTIT.D.ARGRGDHGERNASWSESGNIRLEA---
  34 -TQQASKLVIVTEKLLLKQIAKIIDEAGATGYTVV.D.AGGKGSRNVRSSGQTTVSDTYSNIKFE
  35 -LEKAKLITIIADEALQDRLVAELKSANVKGYTIS.E.AKGEGINHSHLSSWEGKNIRLES----
  36 --IELAKVIVITEAHYEQEMLTSFQKLGIKGFTCM.N.CWGQGHHQVYDEPFMDHSQTRIEM---
  37 --NEGILFTIICEAFLQDRLVHLLQTIGVSGYTII.P.AQGAGSHGKRMGDIAGYNTN-----IE
  38 --NEGILFTIICEAFLQDRLIHLLQTIGVSGYTII.P.AQGAGSHGRRIGDIAGYNTN-----IE
  39 --KQGILVTIIGEAVLQNRLVNLLQTIGVSGYTII.P.AQGAGSHGKRMGDVAGYNTN-----VE
  40 ---QGILVTVICEAVLQHRIVQLLDTVGASGYTII.P.AQGAGSYGQRMGDIEGFNTN-----IQ
  41 ----RKKLIAIVETPHLKRLIDLFRQCGVTGFTVL.EgREGSGLG----GDWTREDVLDATEMKV
  42 -THIAKRVEIVIEAPLERRLTEALTAAGVTGYTVL.PvLGGSGRSGQWSRD----GQIGRAGMVT
  43 --FAKKQIQIICERPILKRVQRHLAANGVTGFTVF.PaLSGSGSEGEWDREGMIGDAGQ---MVK
  44 -THKAKRVEITIEAVMESRLTQALIGAGVTGFTVL.PvLGGSGRSGQWSREG---QVTRAGGMVS
  45 -TVTRKRIEILADKALQRRVTDAIDRIGITGWTIV.PvTSGKGREGVWREESVMGTD-----KVL
  46 -LYNVKLLTITCEILAQENIIEILKKHEITGYTTY.E.VDGNGARGLRGQGLKTEKNVKVE----
  47 -TFPKKRIEIVVEAPLLRRLTSRLDEAGATGWSVV.PiLAGHGRDGDWTAEGQISSASQ---MLM
  48 ---PAKLVSIVTEAAVETLLLREIEAMGIDGYTIA.D.VRGRGTGGRRSGSWDASASIRVDV---
  49 --KPAVLVVIIGETVLQDRMIKLLQELGVTGYTLS.Q.AQGAGRHGNRQGDMVGYNTN-----IE
  50 -FEQRKKIEILIEAVKLDSVIYQLEEIGVPGYTVVgN.ISGKGANGVLDHNCKAKVF----ENTY
  51 ------RCELIIERMAAPRAFRILEDAGLTGYTVL.PaISGFGGATRWNRDTDMSASS---DMVV
  52 -----KKIEVITNSLELPKVLEILEKYGVSGYTVI.EtVTGQGHRGKVIDDLETHILT----NGY
  53 -------LDLICSERELERVVHLIDTAGAPGYSVVrH.VTGRGPHGSVSESMEFSGLG---ANVH
  54 -----KRLDLIVSERELESVIKALDEAGAPGYSVIrP.VTGRGPDTYVTEGMDFSGLG---ANAH
  55 -----KRLDLIVSERELDSVIEALDKAGAPGYSVIrP.VTGRGPDTYVTEGMDFSGLG---ANAH


           70        80        90        100       110
           |         |         |          |         |
   1 VLTENREMAEKIADQVAIKFFTDYAGIIYICEA.EVLYGRTFCGPDGC
   2 VLTENQEMALEISDKIAVQFFNDYAGIAYICDA.EVLYAHKFCGPEGC
   3 VLTPDRDMAENIADQVAVKFFLDFAGMIYICDA.EVLYGHSFCGPDGC
   4 VLTETREMAIQISDEVAAQFFDDYSGIAYLCDA.EVLSAHKFCGPDGC
   5 ILTPDRIMAQNIAKQVADQFFLNFAGMIYLCDA.EVLYGQSFCGPEGC
   6 VLTENREMAEKIADQVAIKFFTDYAGIIYICEA.EVLYGRTFCGPDGC
   7 VLTIDRELALKIADEVAEQFFDNYSGISYISDA.EVLHAHQF------
   8 VLTASREMALKISDEVAAQFFDDYSGITYICDA.EVLYAHKF------
   9 ILTETREMAEEIADRVAVKYFNDYAGIIYICSA.EVLYGHTFCGPEGC
  10 ILTPNRDMAVNISDEVAAQFFDDYSGIAYICDV.--------------
  11 VLTPNRDMAVKISDEVAAQFFDDYSGIAYICDV.--------------
  12 --ICNRELAERIAEHLQVRYYDHFAMVCYLAQV.EVLRGEKF------
  13 VLTPNRDMAVKISDLVAAQFFDDYSGIAYICDV.--------------
  14 -TIVSEEVALRILQRLQEEYFPHYAVIAYVENV.WVVRGEKY------
  15 -TIVSEEVALRILQRLQEEYFPHYAVIAYVENV.WVVRGEKY------
  16 -TIVSEEVALRILQRLQEEYFPHYAVIAYVENV.WVVRGEKY------
  17 VLTPSRDMAVKISDDVATKFFDDYSGIAYICDV.--------------
  18 -TLVSPEVADRIMDAMADHYFPNYAVIAYVSDV.QVVRGEKF------
  19 --ICSRDVAERIAEHLQARYYANFAMVCYLSEV.EVLRPEKF------
  20 -TLVSPEVADHILEAMADHYFPNYAVIAYVTDV.QVMRGEKF------
  21 -ILCDADTSLAITRHVEDAYFRNYAMVTYVADV.GVLRPEKF------
  22 -TLVKPEVAEQILQHLAHTYFPHFAVIAYMTDV.QVVRGDKFHG----
  23 VISVMSEEKVGIFLEGLRPFLNKHSGVVFVSDV.QVSRLEKF------
  24 --VCDAETATAIASYLREHYYDDYAMILFMSNI.DVLRSEKF------
  25 -TLVNAEVAEKILQHLATAYFPHFAVIAYAMDV.QVVRGAKFKGGGG-
  26 IIAAVPQSLVDPLLDGFQPFFDAHSGVIFVSDI.QVGRPVKF------
  27 VISVMPEEKVEAILEGLTPFFNKHSGVVFVSDV.QVSRLEKF------
  28 IIVAVPAELVEPILEGFSPFFGTHTGVMFISDI.QVSRLVKF------
  29 IIVAVPKELVNPILEGLAPFYNEHSGVVFISDI.QVTRLVKF------
  30 VLTGTRELADKIVHEIEAKYYADYSIITYIYQV.EALRDHKF------
  31 --ICSREQAERLLAHLQSRYYPDYAMIAFLQPV.EIVRPEKF------
  32 -TIVPETVANSILAHLAERYLPHFATVVYVQTV.NILRVEKF------
  33 --ICSREQAERLLAHLQSRYYPDYAMVAFLQPV.EIVRPEKF------
  34 VLTPNRDMAVKISDEVAAQFFDDYSGIAYLCDVmEVLHAH--------
  35 --LVSEGKALKIFQIISEKYLEKYPMVIFMNDV.DVIRKERF------
  36 --ITTDEIADSIVDFCRQPRFETHAITVYLESV.RVRDPDKF------
  37 VKTIVTPEKSDQLLDALDHFEISHALIAFRQKV.DGL-----------
  38 IKTIVTSEKSDQLLDELNQFETNRALIAFRQKV.DGL-----------
  39 IKSIVTPDESEQLFEKLEQFQTTHALIAFRQKV.EG------------
  40 VKTIVSLEASDQILEDLQQYRESHALIAFRQQV.DGL-----------
  41 VLSVMKPETAEKVFELAEPFFARYPGIIYAHDV.EVVRGERF------
  42 VVCLIKPDRLDGLLDAIFAVVKKHIGVVSVTDA.HVLRAERF------
  43 VLVVLDAEELDHVLTDIFDVVSPQMGVITISDV.SVVRPDRF------
  44 VVCIIREERLDDLLDAAFAVVERHIGVVAITDC.EVLRAERF------
  45 VLTIAAEDKAMALAEELAPMLTHLGFVLSMWDV.QVIRGERF------
  46 -VIMREEKLQDIVEEISRTLFANYAIVLYVSDV.GVLRPEKF------
  47 LISIVDAARLDTVLEAVFALVSHQIGFVAVSDI.AVVRPERF------
  48 --VCAPVRAEALALRVKERFAPGYALFIFICDA.W-------------
  49 IKTVVSQEVSEAIFSGLVEYQANHALIAFRQNV.EALT----------
  50 IFTVCTAAQATKVLEYLDEVLHYFSGACFISDV.QVLN----------
  51 IVSIGAQDRIDAALTEIERLLSNHIGVLSVGEV.RVLRPGRF------
  52 VMSICTEAQEQALVEAIQPVIKKYGGVCIVSD-.--------------
  53 VIVFCESEALETLRQGLRPILEYYGGVGFVSQ-.--------------
  54 VIVFCEIEVLEKLRVSINPILNYYGGVAYVA--.--------------
  55 VIVFCEIEVLDKLRVTINPILNYYGGVAYVA--.--------------