PFRMAT SS
TARGET T0404
AUTHOR SAM-T02-server
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0404.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 46
METHOD
MODEL 1
M C 0.996
S C 0.834
K C 0.588
R C 0.461
A E 0.474
N E 0.692
K E 0.906
L E 0.974
V E 0.986
I E 0.970
V E 0.953
T E 0.705
E C 0.471
K H 0.368
V H 0.573
L H 0.771
L H 0.901
K H 0.965
K H 0.982
V H 0.994
A H 0.996
K H 0.996
I H 0.996
I H 0.996
E H 0.989
E H 0.938
A T 0.648
G T 0.960
A C 0.871
T C 0.572
G E 0.393
Y E 0.821
T E 0.947
V E 0.938
V E 0.864
D E 0.649
T C 0.395
G C 0.310
G S 0.347
K C 0.442
G C 0.484
S C 0.521
R T 0.475
N T 0.367
V C 0.441
R C 0.324
S C 0.353
T T 0.427
G T 0.337
K C 0.428
P C 0.362
N C 0.297
T C 0.288
S C 0.253
D E 0.353
T E 0.430
D E 0.484
S E 0.469
N E 0.566
V E 0.684
K E 0.878
F E 0.976
E E 0.991
V E 0.986
L E 0.969
T E 0.878
E E 0.625
N C 0.772
R H 0.407
E H 0.725
M H 0.814
A H 0.911
E H 0.916
K H 0.937
I H 0.950
A H 0.958
D H 0.947
Q H 0.928
V H 0.904
A H 0.864
I H 0.792
K H 0.700
F H 0.607
F H 0.338
T T 0.375
D T 0.700
Y C 0.359
A E 0.561
G E 0.934
I E 0.984
I E 0.990
Y E 0.984
I E 0.889
C E 0.621
E E 0.434
A E 0.574
E E 0.727
V E 0.862
L E 0.798
Y E 0.568
G T 0.323
R T 0.395
T G 0.206
F C 0.511
C C 0.463
G C 0.556
P C 0.319
D T 0.447
G C 0.831
C C 0.999
END