# List of top-scoring protein chains for t2k.100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2pii 112 2.40e-05 2pii 2gw8A 114 3.97e-05 2ns1B 116 4.52e-05 2j9cA 119 6.55e-05 1gnkA 112 8.76e-05 2pii d.58.5.1 39073 2eg2A 112 9.12e-05 3bzqA 114 1.17e-04 2o66A 135 6.17e-04 1o51A 114 6.36e-04 d.58.5.4 92480 2dclA 127 5.69e-03 1vfjA 116 1.89e-02 d.58.5.1 113637 1vdhA 249 1.48e+00 d.58.4.10 108523 2d42A 249 1.87e+00 1mumA 295 2.11e+00 c.1.12.7 85108 2h57A 190 2.31e+00 1xg4A 295 2.33e+00 3b9oA 440 2.49e+00 1k1xA 659 2.67e+00 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1vm7A 311 3.58e+00 c.72.1.1 108884 1y8qA 346 3.58e+00 1wwlA 312 3.66e+00 1pj5A 830 4.21e+00 b.44.2.1 94742 c.3.1.2 94743 d.16.1.5 94744 d.250.1.1 94745 2b9wA 424 4.45e+00 2f1rA 171 6.20e+00 1ulrA 88 6.44e+00 d.58.10.1 113283 2dc1A 236 8.14e+00 1s2wA 295 8.32e+00 c.1.12.7 98407 1f74A 293 8.47e+00 1nal3 c.1.10.1 29079 1zkkA 167 9.13e+00 2hfsA 332 9.43e+00 2qyxA 238 1.05e+01 2a2cA 478 1.09e+01 2pgcA 207 1.15e+01 2dejA 350 1.15e+01 1r89A 437 1.16e+01 a.160.1.3 97221 d.218.1.7 97222 d.58.16.2 97223 1gv9A 260 1.19e+01 b.29.1.13 70596 3b8iA 287 1.21e+01 1pymA 295 1.23e+01 1pymA c.1.12.7 29308 1gu7A 364 1.31e+01 b.35.1.2 83321 c.2.1.1 83322 2cz9A 350 1.35e+01 2id1A 130 1.44e+01 2ghpA 292 1.72e+01 d.58.7.1 135184 d.58.7.1 135185 d.58.7.1 135186 1rsgA 516 1.84e+01 1j3bA 529 1.92e+01 c.91.1.1 77071 c.109.1.1 77072 1e6mA 128 1.95e+01 3chy c.23.1.1 31039 1nv8A 284 1.96e+01 c.66.1.30 86224 1qd9A 124 2.08e+01 1qu9A d.79.1.1 39758 1wvqA 167 2.08e+01 1ab5A 125 2.20e+01 3chy c.23.1.1 31056 2nygA 273 2.31e+01 1pujA 282 2.37e+01 c.37.1.8 88294 2jepA 395 2.41e+01 1sqgA 429 2.41e+01 a.79.1.3 105912 c.66.1.38 105913 1jbeA 128 2.51e+01 3chy c.23.1.1 62845 3chy 128 2.53e+01 3chy 2ebeA 106 2.64e+01 2bjdA 101 2.70e+01 2bkxA 242 2.82e+01 2g5cA 281 2.88e+01 a.100.1.12 134646 c.2.1.6 134647 1ee9A 320 2.90e+01 1ee9A c.2.1.7 30288 c.58.1.2 33936 1vddA 228 2.95e+01 e.49.1.1 108519 1w2iA 91 2.96e+01 d.58.10.1 109127 2b0mA 393 2.99e+01 c.1.4.1 127644 1u8tA 129 3.00e+01 c.23.1.1 113192 1josA 128 3.02e+01 d.52.7.1 84191 1vjqA 79 3.02e+01 k.43.1.1 100830 1jw9B 249 3.02e+01 c.111.1.1 67377 1qqrA 138 3.03e+01 1bmlC d.15.5.1 37721 1dtoA 221 3.03e+01 1dtoA b.91.1.1 28405 1ylxA 103 3.21e+01 d.82.5.1 123677 1fseA 74 3.22e+01 1fseA a.4.6.2 60000 1y63A 184 3.27e+01 c.37.1.1 116494 1urrA 102 3.27e+01 d.58.10.1 107998 1fcqA 350 3.29e+01 c.1.8.9 65006 6pfkA 319 3.29e+01 3pfk c.89.1.1 35583 1mb4A 370 3.31e+01 c.2.1.3 78908 d.81.1.1 78909 1d3gA 367 3.36e+01 1d3gA c.1.4.1 28600 1o63A 219 3.36e+01 c.94.1.1 92540 1fsiA 189 3.38e+01 1fsiA d.61.1.1 39536 1uae 419 3.44e+01 1uae 1wvfA 520 3.47e+01 d.58.32.1 121337 d.145.1.1 121338 1eswA 500 3.52e+01 1cwyA c.1.8.1 59500 1s28A 132 3.70e+01 d.198.1.1 105223 2v3zA 440 3.77e+01 2bwvA 440 3.78e+01 c.55.2.1 129387 d.127.1.1 129388 1wl9A 440 3.79e+01 c.55.2.1 120998 d.127.1.1 120999 1r5yA 386 3.80e+01 c.1.20.1 97134 1t0tV 248 3.81e+01 d.58.4.10 106229 1pud 386 3.81e+01 1pud 1pxgA 382 3.82e+01 c.1.20.1 95287 1ep3A 311 3.85e+01 2dorA c.1.4.1 28597 1cwyA 500 3.96e+01 1cwyA c.1.8.1 28789 2qr7A 342 3.98e+01