T0404.t2k.100-30-str

Sequence_ID	Length	Evalue	FSSP-rep	SCOP_domain
2gw8A	114	3.40e-05
2j9cA	119	6.48e-05
2ns1B	116	9.78e-05
2pii	112	1.26e-04	2pii
1gnkA	112	1.65e-04	2pii	d.58.5.1
2eg2A	112	1.98e-04
3bzqA	114	6.28e-04
2o66A	135	1.45e-03
1o51A	114	1.97e-03		d.58.5.4
2dclA	127	5.58e-03
1vfjA	116	3.25e-02		d.58.5.1
2qyxA	238	2.62e-01
2id1A	130	4.50e-01
2h57A	190	1.30e+00
1mb4A	370	1.33e+00		c.2.1.3
				d.81.1.1
1xg4A	295	1.34e+00
3b9oA	440	1.45e+00
1vm7A	311	1.51e+00		c.72.1.1
1mumA	295	1.58e+00		c.1.12.7
2b9wA	424	1.62e+00
2dc1A	236	2.50e+00
1t4bA	367	2.67e+00		c.2.1.3
				d.81.1.1
1pj5A	830	2.70e+00		b.44.2.1
				c.3.1.2
				d.16.1.5
				d.250.1.1
1ulrA	88	2.71e+00		d.58.10.1
1y8qA	346	2.87e+00
1r5yA	386	2.89e+00		c.1.20.1
1pxgA	382	2.90e+00		c.1.20.1
1brmA	367	3.02e+00	1brmA	c.2.1.3
				d.81.1.1
1k1xA	659	3.36e+00		a.8.3.2
				b.30.5.8
				c.6.2.2
1s2wA	295	3.51e+00		c.1.12.7
1ep3A	311	4.42e+00	2dorA	c.1.4.1
1jbeA	128	4.52e+00	3chy	c.23.1.1
1pud	386	5.22e+00	1pud
2f1rA	171	5.41e+00
1fcqA	350	5.62e+00		c.1.8.9
2b33A	140	5.73e+00		d.79.1.1
2bw0A	329	5.87e+00		b.46.1.1
				c.65.1.1
1jffA	451	6.11e+00		c.32.1.1
				d.79.2.1
1tvkA	440	6.23e+00		c.32.1.1
				d.79.2.1
1j5xA	342	6.25e+00		c.80.1.1
2b0mA	393	6.31e+00		c.1.4.1
1eswA	500	6.31e+00	1cwyA	c.1.8.1
1cwyA	500	6.66e+00	1cwyA	c.1.8.1
1d3gA	367	6.66e+00	1d3gA	c.1.4.1
3chy	128	6.77e+00	3chy
1oniA	137	7.00e+00		d.79.1.1
1qd9A	124	7.05e+00	1qu9A	d.79.1.1
1e6mA	128	7.23e+00	3chy	c.23.1.1
1rxxA	421	7.94e+00		d.126.1.4
8abp	306	8.56e+00	8abp
8abpA	306	8.56e+00		c.93.1.1
1pujA	282	9.21e+00		c.37.1.8
2dy0A	190	9.26e+00
1qp8A	303	9.50e+00	1qp8A	c.2.1.4
				c.23.12.1
1c7sA	858	1.03e+01	1qba	b.1.18.2
				b.2.2.3
				c.1.8.6
				d.92.2.1
1b01A	45	1.04e+01	2cpgA	a.43.1.3
2a2cA	478	1.04e+01
1apyB	141	1.07e+01	1apyB
1wvqA	167	1.08e+01
2cpgA	45	1.17e+01	2cpgA	a.43.1.3
1jg1A	235	1.18e+01		c.66.1.7
1ab5A	125	1.19e+01	3chy	c.23.1.1
1gu7A	364	1.20e+01		b.35.1.2
				c.2.1.1
2d59A	144	1.22e+01		c.2.1.8
2bkxA	242	1.23e+01
2elcA	329	1.27e+01
1rscI	111	1.31e+01		d.73.1.1
1y63A	184	1.33e+01		c.37.1.1
1rsgA	516	1.35e+01
1tubA	440	1.37e+01	1tubA	c.32.1.1
				d.79.2.1
1nh8A	304	1.43e+01		c.94.1.1
				d.58.5.3
2nv0A	196	1.44e+01		c.23.16.1
3c24A	286	1.45e+01
1rblI	109	1.48e+01		d.73.1.1
1fseA	74	1.49e+01	1fseA	a.4.6.2
1josA	128	1.50e+01		d.52.7.1
2hfsA	332	1.52e+01
2nsyA	271	1.54e+01	2nsyA	c.26.2.1
1kqpA	271	1.55e+01		c.26.2.1
1u8tA	129	1.55e+01		c.23.1.1
1qba	858	1.56e+01	1qba
1ab6A	125	1.57e+01	3chy	c.23.1.1

Sequence_ID	Length	Evalue	FSSP-rep	SCOP_domain
2ig8A	144	1.58e+01
1s28A	132	1.68e+01		d.198.1.1
1pymA	295	1.74e+01	1pymA	c.1.12.7
1nal1	297	1.81e+01	1nal3
2epiA	100	1.84e+01
2cz9A	350	1.84e+01
2i5eA	211	1.89e+01
1qahA	136	1.91e+01		d.79.1.1
1o63A	219	1.93e+01		c.94.1.1
1nv8A	284	1.96e+01		c.66.1.30
1r89A	437	1.97e+01		a.160.1.3
				d.218.1.7
				d.58.16.2
1uumA	372	2.00e+01		c.1.4.1
2a14A	263	2.08e+01		c.66.1.15
1ja9A	274	2.10e+01		c.2.1.2
1fdyA	297	2.13e+01	1nal3	c.1.10.1
1wkvA	389	2.16e+01		c.79.1.1
1g291	372	2.21e+01	1g291
1y0kA	209	2.25e+01		c.52.1.31
2v9dA	343	2.26e+01
2gaxA	135	2.27e+01
2p0oA	372	2.28e+01
1ae1A	273	2.28e+01	1bdb	c.2.1.2
1b37B	472	2.28e+01	1b37B	c.3.1.2
				d.16.1.5
1sqgA	429	2.28e+01		a.79.1.3
				c.66.1.38
2hf9A	226	2.29e+01
2bjdA	101	2.32e+01
1yovA	537	2.32e+01		c.111.1.2
2choA	716	2.36e+01		a.246.1.1
				c.1.8.10
				d.92.2.3
2a9gA	418	2.45e+01		d.126.1.4
1jxhA	288	2.49e+01		c.72.1.2
1no5A	114	2.54e+01		d.218.1.5
1nal3	297	2.59e+01	1nal3
3b8iA	287	2.66e+01
1vddA	228	2.67e+01		e.49.1.1
2g5cA	281	2.69e+01		a.100.1.12
				c.2.1.6
2ae2A	260	2.70e+01	1bdb	c.2.1.2
2dejA	350	2.74e+01
2k29A	53	2.76e+01
1dquA	538	2.77e+01	1dquA	c.1.12.7
2uykA	129	2.86e+01
2omkA	231	3.03e+01
1wy7A	207	3.09e+01		c.66.1.32
1ylhA	560	3.24e+01
2jepA	395	3.24e+01
1rj9A	304	3.26e+01		a.24.13.1
				c.37.1.10
2nrkA	173	3.34e+01
2bhuA	602	3.46e+01		b.1.18.2
				b.71.1.1
				c.1.8.1
6pfkA	319	3.48e+01	3pfk	c.89.1.1
1ujqA	305	3.49e+01		c.1.12.7
1gkpA	458	3.57e+01		b.92.1.3
				c.1.9.6
1q9uA	130	3.59e+01		d.129.7.1
1xcbA	211	3.60e+01		a.4.5.38
				c.2.1.12
2v3zA	440	3.60e+01
1wl9A	440	3.60e+01		c.55.2.1
				d.127.1.1
1xknA	355	3.62e+01		d.126.1.6
2yv1A	294	3.62e+01
1sr9A	644	3.63e+01		a.5.7.1
				c.1.10.5
				d.270.1.1
2i0fA	157	3.66e+01
2bwvA	440	3.75e+01		c.55.2.1
				d.127.1.1
1cr5A	189	3.76e+01	1cr5A	b.52.2.3
				d.31.1.1
1esmA	316	3.78e+01	1esmA	c.37.1.6
1x1nA	524	3.79e+01		c.1.8.1
2ashA	381	3.91e+01
2rjnA	154	3.92e+01
2au3A	407	3.95e+01
3pfk	319	3.96e+01	3pfk
8rucI	123	3.97e+01	1rboC	d.73.1.1
1x7oA	287	3.97e+01

Please cite the following papers:

Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001
Karplus, K. and Karchin, R. and Draper, J. and Casper, J. and Mandel-Gutfreund, Y. and Diekhans, M. and Hughey, R. ``Combining local-structure, fold-recognition, and new-fold methods for protein structure prediction'' Proteins: Structure Function and Genetics53(S6):491-496,15 Oct 2003
Rachel Karchin, Melissa Cline, Yael Mandel-Gutfreund, and Kevin Karplus. ``Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.'' Proteins: Structure, Function, and Genetics, 51(4):504--514, June 2003.