// This is based on the CASP7 cost function, with some updates
//	to take advantage of new features.
// Weighting is rather arbitrary.
// 	I reduced soft_clashes, to keep from tearing apart nearly
//	right packing.  It needs to be gradually increased.

SetCost \
	align_constraints 100 \
	ehl2_constraints 5 \
	align_sheets 5 \
	nn1000 1 \
	two_stage 1 \
	pred_nb11_back 50 \
	pred_alpha_back 10 \
	pred_n_notor_back 5 \
	pred_bys_back 5 \
	pred_pb_back 3 \
	wet6.5 15  dry5 15 dry6.5 15 dry8 40 dry12 40 \
	phobic_fit 3 \
	sidechain 5 \
	n_ca_c	2 bad_peptide 5 \
	soft_clashes 50  backbone_clashes 10 \
	break 150  \
	hbond_geom 10 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 20 \
	hbond_geom_beta_pair 40 \
	maybe_metal 0.5 \
	maybe_ssbond_geom 5