Best Alignments for T0403

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2fgqX	7.4913e-37	2fgqX/T0403-2fgqX-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
1hxxA	1.9901e-34	1hxxA/T0403-1hxxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
2j1nA	2.9144e-34	2j1nA/T0403-2j1nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2porA	2.9630e-33	2porA/T0403-2porA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
2por	5.2331e-31	2por/T0403-2por-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3prnA	1.2304e-29	3prnA/T0403-3prnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
3prn	3.7611e-29	3prn/T0403-3prn-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1e54A	1.7223e-18	1e54A/T0403-1e54A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
2omf	9.9939e-17	2omf/T0403-2omf-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o4vA	2.0390e-11	2o4vA/T0403-2o4vA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1prn	7.5773e-09	1prn/T0403-1prn-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1t16A	2.9227e-03	1t16A/T0403-1t16A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.4
1fepA	5.8301e-02	1fepA/T0403-1fepA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
2gufA	6.7504e-02	2gufA/T0403-2gufA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
1nqeA	9.2743e-02	1nqeA/T0403-1nqeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
2odjA	5.0149e-01	2odjA/T0403-2odjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1p4tA	6.7166e-01	1p4tA/T0403-1p4tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.1.1
1xkwA	6.9818e-01	1xkwA/T0403-1xkwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kmoA	7.7198e-01	1kmoA/T0403-1kmoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
1qfgA	8.1503e-01	1qfgA/T0403-1qfgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001