# List of top-scoring protein chains for T0403.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 1.15e-23 f.4.3.1 133439 2fgrA 332 1.61e-23 f.4.3.1 133440 1hxuA 340 2.49e-14 f.4.3.1 61384 1phoA 330 2.89e-14 f.4.3.1 43758 2omfA 340 3.25e-14 f.4.3.1 43749 2ixwA 343 3.27e-14 1hxxA 340 3.43e-14 f.4.3.1 61385 1mpfA 340 3.54e-14 f.4.3.1 43752 1bt9A 340 3.76e-14 f.4.3.1 43756 1osmA 342 4.37e-14 f.4.3.1 43769 1gfoA 340 6.36e-14 f.4.3.1 43753 1gfmA 340 6.38e-14 f.4.3.1 43755 1gfpA 340 6.56e-14 f.4.3.1 43750 2j1nA 346 6.87e-14 1gfqA 340 1.12e-13 f.4.3.1 43751 1gfnA 334 2.09e-13 f.4.3.1 43754 2ixxA 354 3.04e-13 1hxtA 340 1.24e-12 f.4.3.1 61383 2porA 301 0.003706 f.4.3.1 43759 1f74A 293 3.098 c.1.10.1 29079 2odjA 428 3.581 2prnA 289 6.439 f.4.3.1 43763 1prnA 289 10.63 f.4.3.1 43762 5prnA 289 10.72 f.4.3.1 43764 6prnA 289 10.88 f.4.3.1 43765 1wiwA 290 11.91 c.80.1.1 114681 1bh3A 289 13.13 f.4.3.1 43766 3prnA 289 13.26 f.4.3.1 43761 7prnA 289 15.48 f.4.3.1 43768 2iciA 227 15.49 8prnA 289 15.62 f.4.3.1 43767 1mmaA 762 17.78 b.34.3.1,c.37.1.9 24587,32184 1mmnA 762 18.46 b.34.3.1,c.37.1.9 24582,32179 1w9kA 770 18.61 1w9iA 770 18.67 1d0yA 761 19.19 b.34.3.1,c.37.1.9 24581,32178 1yv3A 762 19.27 1w9lA 770 19.96 1w9jA 770 20.13 2akaA 776 20.16 1jx2A 776 20.40 b.34.3.1,c.37.1.9 67402,67403 1qd6C 240 22.37 1lvkA 762 22.49 b.34.3.1,c.37.1.9 24576,32173 1i78A 297 23.87 f.4.4.1 66046 1fmvA 761 24.03 b.34.3.1,c.37.1.9 24580,32177 1vomA 762 25.68 b.34.3.1,c.37.1.9 24577,32174 1fw3A 275 26.86 f.4.2.1 60054 1qd5A 275 27.02 f.4.2.1 43748 1g8xA 1010 28.38 k.1.1.1 46378 2dj0A 137 31.30 1kxpD 458 34.45 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 1ilzA 275 34.67 f.4.2.1 66209 1p4tA 155 34.93 f.4.1.1 87779 1ma9A 458 36.03 a.126.1.1,a.126.1.1,a.126.1.1 78887,78888,78889 2dpsA 254 36.69 1j78A 458 36.84 a.126.1.1,a.126.1.1,a.126.1.1 66397,66398,66399 2z3oA 233 36.92 1uxvA 501 37.09 c.82.1.1 108127 1uxtA 501 39.14 c.82.1.1 108125 2gt4A 160 41.40 1ryaA 160 42.09 d.113.1.5 105122 2c58A 537 43.14 c.69.1.1 129891 1h6s1 307 45.01 1eeaA 534 45.17 c.69.1.1 34609 2cekA 535 45.19 c.69.1.1 130347 2dfpA 534 45.23 c.69.1.1 34597 1gqrA 532 45.26 c.69.1.1 70374 1ut6A 537 45.31 c.69.1.1 119698 1ea5A 537 45.31 c.69.1.1 34592 1w6rA 543 45.51 c.69.1.1 114283 1mmgA 762 46.45 b.34.3.1,c.37.1.9 24579,32176 2cxaA 256 46.66 d.108.1.6 130993 2d6oX 159 59.33 1nhcA 336 60.64 b.80.1.3 91879 2d6mA 159 64.86 3gpdG 334 65.57 c.2.1.3,d.81.1.1 30029,39944 1u8fO 335 65.90 c.2.1.3,d.81.1.1 119626,119627 1znqO 338 67.21 c.2.1.3,d.81.1.1 125401,125402 1zkaA 110 74.46 1txkA 498 77.53 b.1.18.2,b.30.5.9 107425,107426 2dpyA 438 81.23 2abrA 418 85.43 d.126.1.4 126530 2aciA 418 86.74 d.126.1.4 126551 2a9gA 418 86.93 d.126.1.4 126435 1rxxA 421 86.97 d.126.1.4 98061 2aafA 418 87.02 d.126.1.4 126471 1ky8A 501 88.61 c.82.1.1 77628