# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 5.69e-29 f.4.3.1 133439 1e54A 332 6.12e-27 f.4.3.1 59258 2j1nA 346 1.79e-25 1hxxA 340 7.23e-25 f.4.3.1 61385 2porA 301 2.12e-23 f.4.3.1 43759 2por 301 4.06e-23 2omf 340 2.66e-22 1prn 289 3.19e-22 3prnA 289 3.96e-22 f.4.3.1 43761 3prn 289 6.01e-22 1fepA 724 0.005608 f.4.3.3 43808 2gufA 594 0.01345 f.4.3.3 135736 1nqeA 594 0.01559 f.4.3.3 86027 1t16A 427 0.04090 f.4.3.4 106242 2fcpA 723 0.05597 f.4.3.3 43802 1by5A 714 0.07433 f.4.3.3 43800 1qfgA 725 0.1021 f.4.3.3 43803 1po0A 751 0.2083 f.4.3.3 94960 1qj8A 148 0.3476 f.4.1.1 43744 1kmoA 774 0.4420 f.4.3.3 72753 1p4tA 155 0.8526 f.4.1.1 87779 1i78A 297 0.9071 f.4.4.1 66046 2jqyA 280 0.9355 2hdiA 639 1.220 2f1cX 286 1.400 2o4vA 411 1.705 1bxwA 172 1.994 f.4.1.1 43743 2iwvA 281 2.482 1qd5A 275 3.848 f.4.2.1 43748 1qd6C 240 4.909 1tlyA 278 6.519 f.4.6.1 107143 1r89A 437 6.572 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2f1vA 197 7.028 1xkwA 665 7.205 2obwA 258 8.654 2oqcA 327 9.401 2odjA 428 9.946 1a5kC 566 10.22 b.92.1.1,c.1.9.2 28425,29047 2f1wA 158 11.25 1qjpA 171 11.43 f.4.1.1 43742 2qedA 258 11.48 2qs8A 418 12.32 1a5mC 566 12.67 b.92.1.1,c.1.9.2 28423,29045 2dpyA 438 12.82 2bhgA 209 13.13 1pvc1 301 15.54 1ww7A 160 15.57 1xm8A 254 15.83 d.157.1.2 115475 2dvyA 226 16.54 2oodA 475 17.68 1fwcC 567 20.60 b.92.1.1,c.1.9.2 28410,29032 2r8cA 426 20.65 2g19A 244 21.94 1kuuA 202 22.48 d.153.2.1 73019 1f1sA 814 22.69 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 1ryiA 382 22.90 c.3.1.2,d.16.1.3 118813,118814 1ubkL 534 23.15 e.18.1.1 88422 2mprA 421 24.32 f.4.3.2 43788 1ubpC 570 27.04 b.92.1.1,c.1.9.2 28432,29054 1a5lC 566 27.57 b.92.1.1,c.1.9.2 28426,29048 1lvmA 229 28.71 b.47.1.3 78243 1t82A 155 29.02 d.38.1.5 106639 1a0tP 413 30.72 f.4.3.2 43794 1e3dB 542 31.68 e.18.1.1 59189 1qh5A 260 32.01 d.157.1.2 42057 2g3fA 421 33.68 2qv3A 457 34.15 2ntkA 222 34.74 d.153.2.1 138583 1t17A 148 36.43 d.129.3.6 112215 1xkrA 206 37.51 d.252.1.1 115421 1jdpA 441 39.87 c.93.1.1 62906 1k07A 263 43.34 d.157.1.1 77218 3b9oA 440 44.11 1hxs1 302 44.23 2ftwA 521 46.90 b.92.1.3,c.1.9.6 134083,134084 2j21A 219 48.21 1k0eA 453 49.01 d.161.1.1 67938 1y0bA 197 49.70 c.61.1.1 122476 1kcxA 518 50.00 b.92.1.3,c.1.9.6 90953,90954 1ng4A 390 51.70 c.3.1.2,d.16.1.3 85666,85667 1x1iA 752 52.82 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2fblA 153 54.90 d.63.1.2 133249 1of5A 221 55.52 d.17.4.2 86933 1qqhA 144 56.26 b.91.1.1 28404 1ejrC 567 58.31 b.92.1.1,c.1.9.2 28420,29042 1gkpA 458 58.54 b.92.1.3,c.1.9.6 70231,70232 1jmxA 494 58.79 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2pbnA 313 59.79 1ej6A 1289 60.38 i.7.1.1 45967 1dpeA 507 64.74 c.94.1.1 35799 1ve9A 347 67.83 c.4.1.2,d.16.1.3 100571,100572 2h4vA 320 69.33 1wkoA 180 70.57 2ax3A 502 70.94 c.72.1.4,c.104.1.1 127477,127478 1obfO 335 71.12 c.2.1.3,d.81.1.1 86768,86769 1jmtA 104 71.94 d.58.7.3 63180 2hbtA 247 73.32 3b79A 129 73.42 1jw9B 249 73.50 c.111.1.1 67377 3bs4A 260 77.49 1nnhA 294 80.46 d.104.1.1 92005 3bkbA 377 83.26 1grj 158 88.45 1acf 125 88.89