# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fgqX	332	3.76e-33	f.4.3.1	133439
1e54A	332	1.34e-30	f.4.3.1	59258
2j1nA	346	2.33e-29		
1hxxA	340	1.59e-28	f.4.3.1	61385
2porA	301	7.82e-27	f.4.3.1	43759
2por	301	1.43e-26		
2omf	340	1.43e-25		
3prnA	289	2.82e-25	f.4.3.1	43761
1prn	289	2.91e-25		
3prn	289	4.05e-25		
1fepA	724	0.003345	f.4.3.3	43808
1t16A	427	0.01531	f.4.3.4	106242
1nqeA	594	0.04831	f.4.3.3	86027
2gufA	594	0.07507	f.4.3.3	135736
2fcpA	723	0.2635	f.4.3.3	43802
1qj8A	148	0.3281	f.4.1.1	43744
1by5A	714	0.3839	f.4.3.3	43800
1po0A	751	0.4095	f.4.3.3	94960
1kmoA	774	0.6042	f.4.3.3	72753
2o4vA	411	0.8169		
1p4tA	155	1.112	f.4.1.1	87779
1qfgA	725	1.139	f.4.3.3	43803
1bxwA	172	1.271	f.4.1.1	43743
1i78A	297	1.742	f.4.4.1	66046
2hdiA	639	2.650		
2iwvA	281	3.149		
1tlyA	278	3.718	f.4.6.1	107143
2jqyA	280	4.425		
1pvc1	301	4.429		
2f1vA	197	5.616		
2f1cX	286	5.920		
3cihA	739	13.01		
1ryiA	382	13.72	c.3.1.2,d.16.1.3	118813,118814
1hxs1	302	14.93		
1r89A	437	15.47	a.160.1.3,d.218.1.7,d.58.16.2	97221,97222,97223
1qjpA	171	18.19	f.4.1.1	43742
2cu9A	161	25.71		
2qedA	258	26.44		
2bhgA	209	26.62		
1ar61	302	27.67		
1x1iA	752	27.79	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
1ar71	302	28.14		
2obwA	258	28.52		
1obfO	335	29.45	c.2.1.3,d.81.1.1	86768,86769
1qd5A	275	30.12	f.4.2.1	43748
1aym1	285	30.78		
1al21	302	33.21		
3bw8A	217	33.46		
2dfzA	381	34.40		
1xkwA	665	35.54		
1qcrG	70	38.60	f.23.13.1	43677
1ww7A	160	38.78		
1a0tP	413	38.85	f.4.3.2	43794
2dvyA	226	39.09		
1w23A	360	41.44	c.67.1.4	114088
2awkA	228	42.26		
2mev1	277	44.14		
1a5kC	566	44.62	b.92.1.1,c.1.9.2	28425,29047
2oqcA	327	46.49		
1ng4A	390	47.40	c.3.1.2,d.16.1.3	85666,85667
1txnA	328	49.14	d.248.1.1	112779
1z6fA	363	49.63	b.105.1.1,e.3.1.1	124520,124521
2h98A	313	50.29		
1be3G	81	51.73	f.23.13.1	43669
2ozpA	345	54.74		
1qd6C	240	55.29		
2dpyA	438	55.67		
1ubpC	570	56.21	b.92.1.1,c.1.9.2	28432,29054
1ei9A	279	56.70	c.69.1.13	34713
1qh5A	260	58.85	d.157.1.2	42057
1e3dB	542	58.87	e.18.1.1	59189
1f1uA	323	59.59	d.32.1.3,d.32.1.3	83200,83201
1f1sA	814	61.20	a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2	64928,64929,64930,64931
1a5mC	566	62.25	b.92.1.1,c.1.9.2	28423,29045
1d7bA	186	65.24	b.1.9.1	22307
1rocA	155	66.29	b.1.22.1	97673
1tme1	274	67.56		
1lvmA	229	68.37	b.47.1.3	78243
2f1wA	158	76.77		
2mprA	421	77.05	f.4.3.2	43788
2qv3A	457	77.69		
2oxaA	600	79.01		
2j21A	219	84.22		
1ubkL	534	85.68	e.18.1.1	88422
1h1wA	289	86.58	d.144.1.7	83460
2h9bA	312	86.86		
2odjA	428	87.75