# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 5.29e-28 f.4.3.1 133439 1e54A 332 2.16e-25 f.4.3.1 59258 2j1nA 346 3.68e-24 1hxxA 340 3.41e-23 f.4.3.1 61385 2porA 301 1.66e-22 f.4.3.1 43759 2por 301 1.97e-22 1prn 289 1.76e-21 3prn 289 3.46e-21 3prnA 289 4.67e-21 f.4.3.1 43761 2omf 340 1.01e-20 1t16A 427 3.626 f.4.3.4 106242 1fepA 724 4.337 f.4.3.3 43808 2c0rA 362 4.748 c.67.1.4 129604 1pvc1 301 5.027 1w23A 360 6.528 c.67.1.4 114088 1qcrG 70 6.575 f.23.13.1 43677 2qv3A 457 7.183 2fcpA 723 7.621 f.4.3.3 43802 2gufA 594 7.727 f.4.3.3 135736 1t82A 155 9.019 d.38.1.5 106639 2bhgA 209 9.413 1wraA 308 10.39 d.157.1.8 121190 1txnA 328 10.75 d.248.1.1 112779 1bjnA 360 11.17 c.67.1.4 34469 1hxs1 302 12.02 2qs8A 418 12.05 1a5kC 566 13.06 b.92.1.1,c.1.9.2 28425,29047 1lvmA 229 14.71 b.47.1.3 78243 1po0A 751 14.89 f.4.3.3 94960 1nr6A 473 18.85 a.104.1.1 92085 1d7bA 186 19.19 b.1.9.1 22307 2cu9A 161 19.80 1pg4A 652 23.97 e.23.1.1 88067 1x1iA 752 25.55 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2f1wA 158 26.66 1by5A 714 27.03 f.4.3.3 43800 1f1sA 814 28.01 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 1aym1 285 29.01 1a5mC 566 30.93 b.92.1.1,c.1.9.2 28423,29045 1z6fA 363 31.45 b.105.1.1,e.3.1.1 124520,124521 1vlqA 337 31.96 c.69.1.25 108848 2oxaA 600 32.31 1r1hA 696 33.38 d.92.1.4 104756 1kmoA 774 35.91 f.4.3.3 72753 3cihA 739 35.99 1eguA 731 37.42 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1dt6A 473 37.70 a.104.1.1 18977 1ve9A 347 39.69 c.4.1.2,d.16.1.3 100571,100572 2fdvA 476 40.26 1vlbA 907 40.40 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1t17A 148 42.90 d.129.3.6 112215 2uurA 245 44.75 2aexA 346 45.42 2dfzA 381 45.54 1t6eX 381 45.62 b.50.1.2 106564 1qh5A 260 47.47 d.157.1.2 42057 1a5lC 566 48.53 b.92.1.1,c.1.9.2 28426,29048 1nqeA 594 48.83 f.4.3.3 86027 1ea1A 455 49.26 a.104.1.1 18970 1rhi3 236 49.64 1rocA 155 52.49 b.1.22.1 97673 1olzA 663 54.56 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1qfgA 725 56.98 f.4.3.3 43803 1b62A 349 59.89 d.14.1.3,d.122.1.2 37567,41108 2iizA 312 60.10 d.58.4.14 137444 1ar61 302 62.30 2oodA 475 62.47 1vlrA 350 62.95 d.13.1.3,d.246.1.1 108860,108861 2javA 279 65.15 d.144.1.7 138243 1sgjA 284 66.15 c.1.12.5 105535 1ar71 302 67.11 2h9bA 312 67.32 1tgoA 773 67.69 c.55.3.5,e.8.1.1 33721,43010 1al21 302 71.05 3bs4A 260 71.82 2c0gA 248 73.07 a.71.1.1,c.47.1.7 129590,129591 1o94A 729 73.38 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1lxkA 721 82.94 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 1x8vA 455 83.60 a.104.1.1 114968 1ubkL 534 84.72 e.18.1.1 88422 1f5fA 205 84.97 b.29.1.4 24222 1ea3A 164 85.28 a.95.1.1 59398 1fwcC 567 86.61 b.92.1.1,c.1.9.2 28410,29032 1kcxA 518 88.79 b.92.1.3,c.1.9.6 90953,90954