# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 1.02e-32 f.4.3.1 133439 1e54A 332 1.41e-29 f.4.3.1 59258 2j1nA 346 1.23e-28 1hxxA 340 3.00e-27 f.4.3.1 61385 2porA 301 1.52e-26 f.4.3.1 43759 2omf 340 1.04e-25 2por 301 1.66e-25 3prnA 289 1.32e-24 f.4.3.1 43761 3prn 289 1.34e-24 1prn 289 2.90e-24 2o4vA 411 0.003583 1fepA 724 0.05854 f.4.3.3 43808 1t16A 427 0.08131 f.4.3.4 106242 1a0tP 413 0.2041 f.4.3.2 43794 2gufA 594 0.2881 f.4.3.3 135736 1nqeA 594 0.9388 f.4.3.3 86027 1qj8A 148 1.541 f.4.1.1 43744 2hf0A 316 1.711 1qfgA 725 1.795 f.4.3.3 43803 2odjA 428 1.924 1x1iA 752 2.368 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1tlyA 278 2.399 f.4.6.1 107143 1bxwA 172 2.421 f.4.1.1 43743 1po0A 751 2.424 f.4.3.3 94960 2hdiA 639 2.799 2aaa 484 3.565 1p4tA 155 3.761 f.4.1.1 87779 2ozpA 345 4.236 2fcpA 723 5.314 f.4.3.3 43802 1aym1 285 6.120 2mprA 421 6.659 f.4.3.2 43788 2jqyA 280 8.113 1pvc1 301 9.372 1r1a1 287 10.56 1wcqA 601 10.91 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 1i78A 297 11.16 f.4.4.1 66046 2oqcA 327 11.23 2icrA 237 11.64 1qjpA 171 12.65 f.4.1.1 43742 1m64A 571 13.38 a.138.1.3,c.3.1.4,d.168.1.1 78683,78684,78685 2f1vA 197 14.09 4aahA 571 14.85 b.70.1.1 27678 1hn0A 1021 16.67 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1vd5A 377 16.73 a.102.1.7 108518 2d73A 738 16.81 2omkA 231 18.96 1tme1 274 19.70 1wbaA 175 20.17 b.42.4.1 25591 1f1uA 323 20.33 d.32.1.3,d.32.1.3 83200,83201 3cihA 739 20.64 1lw7A 365 20.85 c.26.1.3,c.37.1.1 74295,74296 1ttuA 477 21.57 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 2iwvA 281 22.50 1dppA 507 25.21 c.94.1.1 35800 1af6A 421 25.22 f.4.3.2 43772 2cu9A 161 26.27 1qd5A 275 26.47 f.4.2.1 43748 2e57A 637 27.02 1ofzA 312 29.10 b.68.8.1 86978 1n6eA 1071 29.14 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2mev1 277 29.61 1gof 639 30.81 1eudB 396 31.28 c.23.4.1,d.142.1.4 31150,41571 2b6nA 278 31.45 1jpzA 473 32.19 a.104.1.1 67069 1gbsA 185 34.91 d.2.1.5 36986 3by3A 301 35.21 1b4eA 323 38.27 c.1.10.3 29186 2dpyA 438 38.75 1a31A 538 39.21 d.163.1.2,e.15.1.1 42170,43263 1k3rA 268 39.48 b.40.4.10,c.116.1.2 72018,72019 2vovA 336 39.59 1nexB 464 42.30 a.158.1.1,b.69.4.1 80443,80444 1b8sA 504 45.65 c.3.1.2,d.16.1.1 30335,37866 1zxiC 288 48.43 d.87.2.1,d.145.1.3 125776,125777 3b7kA 333 48.94 1ubpC 570 49.23 b.92.1.1,c.1.9.2 28432,29054 1kmoA 774 49.45 f.4.3.3 72753 2hcnA 595 50.01 1uisA 231 50.24 d.22.1.1 99431 1qcrG 70 50.46 f.23.13.1 43677 2j21A 219 50.46 1usyA 275 50.67 d.104.1.1 113422 1gtmA 419 51.18 c.2.1.7,c.58.1.1 30223,33871 2cxaA 256 52.38 d.108.1.6 130993 3bbjA 272 52.93 2awkA 228 53.24 3cc6A 281 53.70 1a36A 592 53.87 a.2.8.1,d.163.1.2,e.15.1.1 15715,42173,43266 1pjrA 724 56.94 c.37.1.19,c.37.1.19 32391,32392 1iqpA 327 58.70 a.80.1.1,c.37.1.20 62649,62650 1al21 302 59.15 1olzA 663 59.64 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1w23A 360 59.72 c.67.1.4 114088 1jv1A 505 60.24 c.68.1.5 71892 1qd6C 240 60.66 1pn0A 665 61.49 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1xssA 225 61.79 1b4vA 504 62.16 c.3.1.2,d.16.1.1 30334,37865 1z6fA 363 63.49 b.105.1.1,e.3.1.1 124520,124521 2bjfA 329 64.14 2qv3A 457 65.05 2qomA 285 65.41 1ar61 302 66.95 1eg5A 384 67.89 c.67.1.3 34429 2d1eA 248 68.03 2ddrA 306 68.33 d.151.1.3 131398 1my5A 114 71.55 b.1.18.1 79673 1htqA 477 71.87 d.15.9.1,d.128.1.1 71035,71036 1zvdA 380 72.59 1rhi3 236 75.56 1wba 175 75.73 2f1wA 158 76.59 1vjpA 394 76.89 c.2.1.3,d.81.1.3 100828,100829 1ar71 302 78.73 1rocA 155 81.10 b.1.22.1 97673 1nuiA 255 81.97 e.13.1.2,g.41.3.2 86194,86195 1hsbA 270 82.39 b.1.1.2,d.19.1.1 20736,38257 1mq4A 272 83.62 d.144.1.7 91391 1xwl 580 83.75 1woqA 267 84.14 c.55.1.10,c.55.1.10 109462,109463 2gw3A 225 84.27 1ay0A 680 84.90 c.36.1.10,c.36.1.6,c.48.1.1 31823,31824,33100 2dp5A 332 85.33 3bw8A 217 88.63