# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 1.29e-31 f.4.3.1 133439 1e54A 332 3.08e-29 f.4.3.1 59258 2j1nA 346 4.95e-28 1hxxA 340 2.42e-27 f.4.3.1 61385 2porA 301 1.04e-25 f.4.3.1 43759 2por 301 1.83e-25 2omf 340 1.49e-24 1prn 289 3.54e-24 3prnA 289 4.68e-24 f.4.3.1 43761 3prn 289 4.82e-24 1fepA 724 0.004897 f.4.3.3 43808 1t16A 427 0.03890 f.4.3.4 106242 1nqeA 594 0.05105 f.4.3.3 86027 2gufA 594 0.07755 f.4.3.3 135736 2fcpA 723 0.1976 f.4.3.3 43802 1by5A 714 0.2730 f.4.3.3 43800 2o4vA 411 0.3276 1qj8A 148 0.3406 f.4.1.1 43744 1qfgA 725 0.4227 f.4.3.3 43803 1bxwA 172 0.9487 f.4.1.1 43743 1kmoA 774 1.060 f.4.3.3 72753 1po0A 751 1.132 f.4.3.3 94960 1i78A 297 1.618 f.4.4.1 66046 1pvc1 301 1.915 1tlyA 278 1.984 f.4.6.1 107143 2hdiA 639 2.043 1p4tA 155 2.899 f.4.1.1 87779 2jqyA 280 4.145 1hxs1 302 4.632 2f1vA 197 7.464 1qjpA 171 8.722 f.4.1.1 43742 3cihA 739 8.831 2iwvA 281 9.264 1x1iA 752 10.81 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1txnA 328 11.15 d.248.1.1 112779 2cu9A 161 11.58 1aym1 285 12.99 1qd5A 275 16.54 f.4.2.1 43748 1al21 302 17.47 2f1cX 286 17.99 1ar71 302 19.11 2awkA 228 19.18 1w23A 360 19.32 c.67.1.4 114088 1lvmA 229 20.37 b.47.1.3 78243 2bhgA 209 22.23 1qcrG 70 22.35 f.23.13.1 43677 1ar61 302 24.37 1be3G 81 24.84 f.23.13.1 43669 3bw8A 217 26.33 2dpyA 438 28.57 2j21A 219 30.78 2obwA 258 34.00 1qd6C 240 36.62 1f1sA 814 37.13 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 1ww7A 160 37.33 1epwA 1290 39.32 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1my5A 114 42.01 b.1.18.1 79673 1a5kC 566 43.84 b.92.1.1,c.1.9.2 28425,29047 1z6fA 363 44.45 b.105.1.1,e.3.1.1 124520,124521 2ozpA 345 45.01 1r89A 437 46.68 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1xssA 225 47.91 2dvyA 226 48.66 2c0rA 362 51.36 c.67.1.4 129604 1cb8A 678 51.68 a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2f1wA 158 52.51 2icrA 237 52.67 2omkA 231 52.99 1f1uA 323 53.95 d.32.1.3,d.32.1.3 83200,83201 1rocA 155 54.99 b.1.22.1 97673 1tme1 274 57.02 2qedA 258 58.70 1xkrA 206 60.00 d.252.1.1 115421 1ve9A 347 62.63 c.4.1.2,d.16.1.3 100571,100572 2odjA 428 62.68 1ryiA 382 65.66 c.3.1.2,d.16.1.3 118813,118814 2ekdA 207 67.40 1qh5A 260 71.41 d.157.1.2 42057 1tk1A 260 71.88 d.248.1.1 107066 1d7bA 186 73.60 b.1.9.1 22307 1xkwA 665 75.11 1h1wA 289 75.30 d.144.1.7 83460 1a5mC 566 76.40 b.92.1.1,c.1.9.2 28423,29045 3c5nA 246 76.69 1t70A 255 76.96 d.159.1.9 112275 1t17A 148 78.85 d.129.3.6 112215 2mev1 277 79.53 2dfzA 381 80.97 1jw9B 249 80.97 c.111.1.1 67377 2fblA 153 81.66 d.63.1.2 133249 1r1a1 287 83.66 1k3rA 268 86.73 b.40.4.10,c.116.1.2 72018,72019 1ng4A 390 88.00 c.3.1.2,d.16.1.3 85666,85667