# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fgqX	332	1.78e-37	f.4.3.1	133439
1e54A	332	2.33e-34	f.4.3.1	59258
2j1nA	346	6.36e-33		
1hxxA	340	5.12e-32	f.4.3.1	61385
2porA	301	6.63e-30	f.4.3.1	43759
2por	301	1.16e-29		
2omf	340	1.77e-28		
1prn	289	3.45e-28		
3prnA	289	4.55e-28	f.4.3.1	43761
3prn	289	6.21e-28		
1fepA	724	0.007799	f.4.3.3	43808
1t16A	427	0.01495	f.4.3.4	106242
2gufA	594	0.07107	f.4.3.3	135736
1nqeA	594	0.09746	f.4.3.3	86027
2fcpA	723	0.1360	f.4.3.3	43802
1by5A	714	0.1566	f.4.3.3	43800
1qfgA	725	0.2005	f.4.3.3	43803
1qj8A	148	0.4644	f.4.1.1	43744
1p4tA	155	0.9034	f.4.1.1	87779
1bxwA	172	1.196	f.4.1.1	43743
1kmoA	774	1.216	f.4.3.3	72753
2o4vA	411	1.223		
1tlyA	278	1.275	f.4.6.1	107143
1po0A	751	1.282	f.4.3.3	94960
2hdiA	639	1.868		
1i78A	297	4.324	f.4.4.1	66046
1pvc1	301	5.121		
2f1vA	197	9.567		
1x1iA	752	14.92	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
1hxs1	302	16.00		
1f1sA	814	18.71	a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2	64928,64929,64930,64931
1qjpA	171	19.32	f.4.1.1	43742
1txnA	328	19.69	d.248.1.1	112779
2jqyA	280	20.31		
2iwvA	281	20.33		
1z6fA	363	21.63	b.105.1.1,e.3.1.1	124520,124521
3bw8A	217	24.69		
1ar71	302	28.34		
2qv3A	457	28.64		
2h98A	313	29.27		
1aym1	285	29.53		
2dvyA	226	31.74		
1ww7A	160	31.94		
2cu9A	161	32.37		
2obwA	258	32.53		
1al21	302	33.19		
1ar61	302	33.84		
1lvmA	229	36.32	b.47.1.3	78243
3c5nA	246	38.03		
2h9bA	312	38.07		
2mev1	277	39.11		
2f1cX	286	40.13		
2ozpA	345	42.41		
1f1uA	323	43.22	d.32.1.3,d.32.1.3	83200,83201
1qh5A	260	43.81	d.157.1.2	42057
3cihA	739	45.99		
1qcrG	70	49.88	f.23.13.1	43677
1cb8A	678	50.53	a.102.3.2,b.24.1.1,b.30.5.2	18849,23898,24422
1t82A	155	50.96	d.38.1.5	106639
2qedA	258	52.04		
1a5kC	566	54.27	b.92.1.1,c.1.9.2	28425,29047
1obfO	335	56.61	c.2.1.3,d.81.1.1	86768,86769
2oqcA	327	57.46		
2bhgA	209	57.47		
1xssA	225	57.82		
1xkrA	206	58.27	d.252.1.1	115421
1qd5A	275	59.07	f.4.2.1	43748
1ryiA	382	59.77	c.3.1.2,d.16.1.3	118813,118814
1tme1	274	62.06		
1wbaA	175	63.89	b.42.4.1	25591
1r89A	437	63.99	a.160.1.3,d.218.1.7,d.58.16.2	97221,97222,97223
1rocA	155	65.79	b.1.22.1	97673
2f1wA	158	66.47		
1a5mC	566	75.12	b.92.1.1,c.1.9.2	28423,29045
2j21A	219	75.27		
1lxkA	721	79.11	a.102.3.2,b.24.1.1,b.30.5.2	74331,74332,74333
1d7bA	186	79.84	b.1.9.1	22307
1xm8A	254	81.47	d.157.1.2	115475
1rhi3	236	82.92		
2ekdA	207	84.35		
1fwcC	567	85.78	b.92.1.1,c.1.9.2	28410,29032
1my5A	114	87.89	b.1.18.1	79673
2dfzA	381	88.13		
2omkA	231	89.75