# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 2.40e-34 f.4.3.1 133439 1e54A 332 1.84e-31 f.4.3.1 59258 2j1nA 346 4.03e-30 1hxxA 340 2.85e-29 f.4.3.1 61385 2porA 301 3.42e-27 f.4.3.1 43759 2por 301 4.27e-27 2omf 340 3.49e-26 1prn 289 5.56e-26 3prnA 289 7.22e-26 f.4.3.1 43761 3prn 289 9.56e-26 1fepA 724 0.006735 f.4.3.3 43808 2gufA 594 0.01968 f.4.3.3 135736 1nqeA 594 0.02491 f.4.3.3 86027 1t16A 427 0.02921 f.4.3.4 106242 1by5A 714 0.2281 f.4.3.3 43800 2fcpA 723 0.2393 f.4.3.3 43802 1qfgA 725 0.4689 f.4.3.3 43803 1p4tA 155 0.9397 f.4.1.1 87779 1qj8A 148 1.308 f.4.1.1 43744 1po0A 751 1.471 f.4.3.3 94960 1kmoA 774 1.917 f.4.3.3 72753 2hdiA 639 2.538 1bxwA 172 2.618 f.4.1.1 43743 1i78A 297 2.688 f.4.4.1 66046 1tlyA 278 3.463 f.4.6.1 107143 1pvc1 301 6.841 2iwvA 281 7.645 2jqyA 280 8.080 2o4vA 411 10.03 1hxs1 302 15.72 2f1vA 197 18.73 2obwA 258 20.84 2mev1 277 22.25 2f1cX 286 22.52 2ozpA 345 23.37 1obfO 335 23.88 c.2.1.3,d.81.1.1 86768,86769 2bhgA 209 24.31 1f1sA 814 26.31 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 1x1iA 752 26.47 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1lvmA 229 26.69 b.47.1.3 78243 1z6fA 363 29.89 b.105.1.1,e.3.1.1 124520,124521 1qd5A 275 30.38 f.4.2.1 43748 1a5kC 566 30.81 b.92.1.1,c.1.9.2 28425,29047 2dvyA 226 31.37 1ww7A 160 31.70 1aym1 285 32.85 2cu9A 161 32.96 2qedA 258 34.28 1qjpA 171 36.84 f.4.1.1 43742 1t82A 155 37.22 d.38.1.5 106639 3bw8A 217 37.31 3c5nA 246 38.39 1qd6C 240 38.41 1a5mC 566 38.69 b.92.1.1,c.1.9.2 28423,29045 1ar71 302 40.15 1qh5A 260 41.50 d.157.1.2 42057 1ar61 302 43.56 1al21 302 45.91 1ubkL 534 48.06 e.18.1.1 88422 2f1wA 158 49.36 2dpyA 438 53.06 1qcrG 70 54.12 f.23.13.1 43677 1ryiA 382 54.60 c.3.1.2,d.16.1.3 118813,118814 2oqcA 327 55.22 1txnA 328 55.37 d.248.1.1 112779 1w23A 360 55.68 c.67.1.4 114088 1d7bA 186 60.10 b.1.9.1 22307 1n12A 138 60.96 b.2.3.2 79779 1r89A 437 61.04 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2odjA 428 64.50 2dfzA 381 65.72 1tme1 274 66.20 1ng4A 390 67.49 c.3.1.2,d.16.1.3 85666,85667 1eguA 731 68.53 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1fwcC 567 72.84 b.92.1.1,c.1.9.2 28410,29032 2ekdA 207 74.34 1lxkA 721 74.94 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 1xm8A 254 75.27 d.157.1.2 115475 2j21A 219 75.90 2oodA 475 79.60 2mprA 421 81.23 f.4.3.2 43788 2h98A 313 85.50 2pvaA 345 85.94 d.153.1.3 41850 1xkwA 665 86.39 1f1uA 323 86.41 d.32.1.3,d.32.1.3 83200,83201 1ubpC 570 89.95 b.92.1.1,c.1.9.2 28432,29054